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(-) Description

Title :  STRUCTURE OF RICKETTSIA BELLII EFFECTOR PROTEIN RICKCE
 
Authors :  J. N. Pruneda, D. Komander
Date :  30 Dec 15  (Deposition) - 27 Jul 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Enzyme, Ce Clan, Deubiquitinase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. N. Pruneda, C. H. Durkin, P. P. Geurink, H. Ovaa, B. Santhanam, D. W. Holden, D. Komander
The Molecular Basis For Ubiquitin And Ubiquitin-Like Specificities In Bacterial Effector Proteases.
Mol. Cell V. 63 261 2016
PubMed-ID: 27425412  |  Reference-DOI: 10.1016/J.MOLCEL.2016.06.015

(-) Compounds

Molecule 1 - RICKCE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 420-691
    Gene: RBE_0198
    Organism Scientific: RICKETTSIA BELLII
    Organism Taxid: 33990

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5HAM)

(-) Sites  (0, 0)

(no "Site" information available for 5HAM)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.....eee...ee......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.....eeeeeeeee....eeeeeee.......hhhhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhhhhhh.....hhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ham A 423 DYWYTENEITHLLTAQLDEKKFSVQPAITFRNTALTEEMLKDYTAKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVIPIEMGYGHWTVLVAKYDKKDNQIILTFNDSLGNSINYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTDQSACGVFTVDNGIKIAKGQAILSTEESKGEKGLRLREHHAQILTDAMFKQDAQWIRQQ 682
                                   432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682


Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh....eee...ee......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee.....eeeeeeeee....eeeeeee.......hhhhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ham B 423 DYWYTENEITHLLTAQLDEKKFSVQPAITFRNTALTEEMLKDYTAKGEEKNKILAEVQETIKIANLIPDKEERALMLGDAKKREEILKLSDAEREKLKNDLLRGGEAQQQINEDILNRATKDIKDNGKEAAVIPIEMGYGHWTVLVAKYDKKDNQIILTFNDSLGNSINYDGQKLPKLIDKTLGNLPNKPIIIDEQTKQQTDQSACGVFTVDNGIKIAKGQAILSTEESKGEKGLRLREHHAQILTDAMFKQDAQWIRQQ 682
                                   432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HAM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HAM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HAM)

(-) Gene Ontology  (0, 0)

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