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(-) Description

Title :  CRYSTAL STRUCTURE OF SIAH2 SBD DOMAIN
 
Authors :  A. Dong, Q. Zhang, J. R. Walker, C. Bountra, C. H. Arrowsmith, A. M. Edwar Y. Tong, Structural Genomics Consortium (Sgc)
Date :  28 Dec 15  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sbd, Siah2, Structural Genomics, Structural Genomics Consortium, Sgc, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Zhang, A. Dong, J. R. Walker, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong, Structural Genomics Consortium (Sgc)
Crystal Structure Of Siah2 Sbd Domain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE SIAH2
    Chains: A, B
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MKH8SUMO
    Expression System Strain: BL21-CODONPLUS-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SIAH2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SEVEN IN ABSENTIA HOMOLOG 2,HSIAH2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2CL3Ligand/IonCHLORIDE ION
3UNX4Ligand/IonUNKNOWN ATOM OR ION
4ZN4Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:138 , CYS A:145 , HIS A:157 , CYS A:161binding site for residue ZN A 401
2AC2SOFTWARECYS A:168 , CYS A:175 , HIS A:187 , HIS A:192binding site for residue ZN A 402
3AC3SOFTWARESER A:167 , HOH A:572 , HOH A:581binding site for residue CL A 403
4AC4SOFTWAREHIS A:192 , LYS A:193 , SER A:194binding site for residue CL A 404
5AC5SOFTWAREPHE A:261 , ALA A:262 , THR A:279 , HOH A:549 , PHE B:225 , ARG B:271 , ARG B:273 , HOH B:593binding site for residue 1PE B 401
6AC6SOFTWARECYS B:138 , CYS B:145 , HIS B:157 , CYS B:161binding site for residue ZN B 402
7AC7SOFTWARECYS B:168 , CYS B:175 , HIS B:187 , HIS B:192binding site for residue ZN B 403
8AC8SOFTWAREGLU B:237binding site for residue CL B 404
9AC9SOFTWAREPRO B:171 , SER B:194 , VAL B:216 , ASP B:217 , TRP B:218 , VAL B:219 , HOH B:501binding site for residue 1PE B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H9M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H9M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H9M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H9M)

(-) Exons   (0, 0)

(no "Exon" information available for 5H9M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..hhhhh...eee..hhhhhhhhh....ee..........eehhhhhhhhhhhhh...eeee..eeeeee.........eeeeeeee..eeeeeeeeeeeee..eeeeeeeeee..hhhhhh..eeeeeeee..eeeeeee..ee.hhhhhhhhhh...eeeehhhhhhhh....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h9m A 132 SAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIST 321
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..hhhhh...ee...hhhhhhhhh....ee..........eehhhhhhhhhhhhh...eeee..eeeeee........eeeeeeeee..eeeeeeeeeeeee..eeeeeeeeee..hhhhhh..eeeeeeee..eeeeeee..ee...hhhhhhhh...eeeehhhhhhhh....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h9m B 133 AVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIST 321
                                   142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H9M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H9M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H9M)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  5h9m
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