5H67 - JenaLib

Title :   CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS SMC HEAD DOMAIN COMPLEXED WITH THE COGNATE SCPA C-TERMINAL DOMAIN AND SOAKED ATP

Authors :   K. Kamada, T. Hirano

Date :   11 Nov 16 (Deposition) - 15 Mar 17 (Release) - 19 Apr 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.07

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (1x)

Keywords :   Smc Protein, Dna Binding Protein-Cell Cycle Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Kamada, M. Su'Etsugu, H. Takada, M. Miyata, T. Hirano
Overall Shapes Of The Smc-Scpab Complex Are Determined By Balance Between Constraint And Relaxation Of Its Structural Parts
Structure V. 25 603 2017
PubMed-ID: 28286005 | Reference-DOI: 10.1016/J.STR.2017.02.008

Compounds

Molecule 1 - CHROMOSOME PARTITION PROTEIN SMC
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-22B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL, UNP RESIDUES 1-199
	Gene	:	SMC, YLQA, BSU15940
	Organism Common	:	BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
	Organism Scientific	:	BACILLUS SUBTILIS (STRAIN 168)
	Organism Taxid	:	224308
	Strain	:	168

Molecule 2 - CHROMOSOME PARTITION PROTEIN SMC
	Chains	:	B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-22B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL, UNP RESIDUES 1000-1186
	Gene	:	SMC, YLQA, BSU15940
	Mutation	:	YES
	Organism Common	:	BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
	Organism Scientific	:	BACILLUS SUBTILIS (STRAIN 168)
	Organism Taxid	:	224308
	Strain	:	168

Molecule 3 - SEGREGATION AND CONDENSATION PROTEIN A
	Chains	:	C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-28M
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 176-251
	Gene	:	SCPA, YPUG, BSU23220
	Organism Common	:	BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
	Organism Scientific	:	BACILLUS SUBTILIS (STRAIN 168)
	Organism Taxid	:	224308
	Strain	:	168

Structural Features

Chains, Units

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Sites (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:12 , SER A:13 , GLY A:34 , GLY A:36 , LYS A:37 , SER A:38 , ASN A:39 , ARG A:57 , GLU A:62 , ASP A:63 , ILE A:65 , PHE A:66 , ALA A:67 , HOH A:1137 , HOH A:1159 , MET B:1165 , HOH B:1206	binding site for residue ATP A 1001

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee........eeee....eeeee.....hhhhhhhhhhhhh...........hhhhhh...........eeeeeeeee...........eeeeeeeee....eeeee..eeehhhhhhhhhhhh........eeehhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5h67 A    1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIFAGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQPCRLKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNRVEDILHELE  199
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..........eeeeee......ee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhhhh.eeeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5h67 B  999 MRYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDQVEAALDEANVFRFAQYLKKYSSDTQFIVITHRKGTMEEADVLYGVTMQESGVSKVISVKLE 1179
                                  1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178

Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                    
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...ee.hhh....hhhhhhhhhhhhhhhhhh..eeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                5h67 C  180 PIEARMNEIVHSLKSRGTRINFMDLFPYEQKEHLVVTFLAVLELMKNQLVLIEQEHNFSDIYITGSE  246
                                   189       199       209       219       229       239

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (14, 18)

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Description