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(-) Description

Title :  CRYSTAL STRUCTURE OF ARABIDOPSIS SNC1 TIR DOMAIN
 
Authors :  K. G. Hyun, J. M. Yoon, J. J. Song
Date :  22 Oct 16  (Deposition) - 07 Dec 16  (Release) - 07 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Plant, Immunity, Rprotein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. G. Hyun, Y. Lee, J. Yoon, H. Yi, J. J. Song
Crystal Structure Of Arabidopsis Thaliana Snc1 Tir Domain
Biochem. Biophys. Res. Commun. V. 481 146 2016
PubMed-ID: 27818198  |  Reference-DOI: 10.1016/J.BBRC.2016.11.004

(-) Compounds

Molecule 1 - PROTEIN SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 17-190
    Gene: SNC1, BAL, AT4G16890, DL4475C, FCAALL.51
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATSNC1,DISEASE RESISTANCE RPP5-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5H3C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H3C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H3C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H3C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H3C)

(-) Exons   (0, 0)

(no "Exon" information available for 5H3C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.hhhhhh.hhhhhhhhhhhhh..........hhh.eeeeeeee..hhhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...ee.hhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h3c A  17 GSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAITFIDDLLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQmVIPIFFHVDASEVKKQTGEFGKVFEETCKAKSEDEKQSWKQALAAVAVmAGYDLRKWPSEAAmIEELAEDVLRKTmTP 185
                                    26        36        46       |67        77        87        97       107       117       127       137       147       157       167  |    177     |  
                                                                54|                                      107-MSE                                          156-MSE       170-MSE      183-MSE
                                                                 66                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhh.hhhhhhhhhhhhh.........hhh.eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...ee.hhh.hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5h3c B  20 RYDVFPSFRGEDVRDSFLSHLLKELRGKAITFIDDLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQmVIPIFFHVDASEVKKQTGEFGKVFEETEKQSWKQALAAVAVmAGYDLRKWPSEAAmIEELAEDVLRKTm 183
                                    29        39        49    ||  71        81        91       101     | 111       121       131  ||   148       158       168 |     178    |
                                                             54|                                     107-MSE                    134|           156-MSE       170-MSE      183-MSE
                                                              67                                                                 142
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H3C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H3C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H3C)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SNC1_ARATH | O23530: 5tec

(-) Related Entries Specified in the PDB File

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