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(-) Description

Title :  CRYO-EM STRUCTURE OF PAECAS3-ACRF3 COMPLEX
 
Authors :  X. Zhang, J. Ma, Y. Wang, J. Wang
Date :  07 Aug 16  (Deposition) - 21 Sep 16  (Release) - 19 Oct 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Crispr/Cas System Anti-Crispr Proteins Cas3 Acrf3, Hydrolase- Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wang, J. Ma, Z. Cheng, X. Meng, L. You, M. Wang, X. Zhang, Y. Wang
A Crispr Evolutionary Arms Race: Structural Insights Into Viral Anti-Crispr/Cas Responses
Cell Res. V. 26 1165 2016
PubMed-ID: 27585537  |  Reference-DOI: 10.1038/CR.2016.103

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED NUCLEASE/HELICASE CAS3 SUBTYPE I-F/YPEST
    Chains: A
    EC Number: 3.1.-.-, 3.6.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: CAS3
    Organism Scientific: PSEUDOMONAS AERUGINOSA UCBPP-PA14
    Organism Taxid: 208963
    Strain: UCBPP-PA14
    Synonym: TYPE I-F CRISPR-ASSOCIATED NUCLEASE/HELICASE CAS3
 
Molecule 2 - ANTI-CRISPR PROTEIN 3
    Chains: B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: JBD5_035
    Organism Scientific: PSEUDOMONAS PHAGE JBD5
    Organism Taxid: 1223261
    Synonym: ACRF3,UNCHARACTERIZED PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GQH)

(-) Sites  (0, 0)

(no "Site" information available for 5GQH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GQH)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric/Biological Unit
No.Residues
1Gly A:140 -Lys A:141
2Asp A:145 -Ala A:146
3Gly A:162 -Pro A:163
4Pro A:163 -Gly A:164
5Glu A:179 -Thr A:180
6Thr A:180 -Gly A:181
7Arg A:193 -Gln A:194
8Leu A:237 -Pro A:238
9Pro A:263 -His A:264
10Asp A:439 -Pro A:440
11Gly A:443 -Ala A:444
12Asn A:879 -Pro A:880
13Arg A:884 -Pro A:885
14Val A:918 -Glu A:919
15Phe A:921 -Pro A:922

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GQH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GQH)

(-) Exons   (0, 0)

(no "Exon" information available for 5GQH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:901
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh...hhhhhhhhhhh....hhhhhhhh..................hhhhhhhhhhhhhh.........hhhhhhhh....hhhhhh..hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhh.......eeee......hhhhhhhhhhhhh.....eeee...ee...........hhhhhhhhh.eee.hhhhhhhhhh...hhhhhhhhhhhhh..eee.hhhhh..hhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhh.eeeee.....eeee..hhhhhhhhhhhhhhhhhhhhhh.......ee.....hhhhhhhhhhhhhhhhhhh.eee..eeeeeeeee..hhhhhhhhhhhhhhh.....eeeeeeee....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhh......eeee..hhhhhhhhhhhhhh...........eee...hhhhhhh....................hhhhhhhhhhhh...hhhhhh.........hhhhhhhhhhhhh......hhhhhhhh.....hhhhhhh..........eeeee.......eeeeee....eee.....ee........eee....hhhhhhhhhhhhh..hhhhhhh..............eee...eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gqh A  106 WHSAEDIRLLTVMAALFHDIGKASQAFQAKLRNRGKPMADAYRHEWVSLRLFEAFVGPGSSDEDWLRRLADKRETGDAWLSQLARDDRQSAPPGPFQKSRLPPLAQAVGWLIVSHHRLPNGDHRGSASLARLPAPIQSQWCGAAKEKAACWQFPHGLPFASAHWRARTALCAQSMLERPGLLARGPALLHDSYVMHVSRLILMLADHHYSSLPPNFPLHANTDRDSGKLKQRLDEHLLGVALHSRKLAGTLPRLERQLPRLARHKGFTRRVEQPRFRWQDKAYDCAMACREQAMEHGFFGLNLASTGCGKTLANGRILYALADPQRGARFSIALGLRSLTLQTGQAYRERLGLGDDDLAILVSHVHFGPLREWLGRNSAGNRLLQAPILACTIDHLMPASESLRGGHQIAPLLRLMTSDLVLDEVDDFDIDDLPALSRLVHWAGLFGSRVLLSSATLPPALVQGLFEAYRSGREIFQRHIRCAWFDEFSSQSSAHGAVTSFSEAHATFVAQRLAKLEQLPPRRQAQLCTVHLCRELAGQMNTWMADLHRCHHTEHQGRRISFGLLRLANIEPLIELAQAILAQGAPEGLHVHLCVYHSRHPLLVRSAIERQLDELLKRSDDDAAALFARPTLAKALQASTERDHLFVVLASPVAEVGRDHDYDWAIVEPSSMRSIIQLAGRIRRHRSGFSGEANLYLLSRNIRSLEGQNPAFQRPGFETPDFPLDSHDLHDLLDPALLARIDASPRIVEPFPLFPRSRLVDLEHRRLRALMLASLLGVPLWWQTPASLSGALQTSQPFRAGAKERCYALLPDEDDEERLHFSRYEEGTWSNQDNLLRNLDLTYGPRIQTWGTVNYREELVAMAGREDLDLRQCAMRYGEVRLRENTQGWSYHPYLGFKKYN 1076
                                   115       125       135       145       155       165       175       185       195       205       215       225       235       245  ||   259       269       279       289       299       309       319  ||   336       346       356       366       376       386       396       406       416       426       436       446       456       466       476 ||   |523       533       543       553       563       573       583       593       603       613       623       642       652       662       672       682       692||     710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940  ||   955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075 
                                                                                                                                                                        248|                                                                  322|                                                                                                                                                 478| 514|                                                                                                            632|                                                693|                                                                                                                                                                                                                                              943|                                                                                                                               
                                                                                                                                                                         253                                                                   330                                                                                                                                                  510  521                                                                                                             642                                                 702                                                                                                                                                                                                                                               949                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gqh B    2 SNTISDRIVARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLVDESNHEEYREFKAWEEALLNADGRVASSPFADWGWWYRIANVMLATASQNVGVTWGSRVHGRLMAIFQDKFKQRYE  136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     


Chain C from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5gqh C    2 SNTISDRIVARSVIEAARFIQSWEDADPDSLTEDQVLAAAGFAARLHEGLQATVLQRLVDESNHEEYREFKAWEEALLNADGRVASSPFADWGWWYRIANVMLATASQNVGVTWGSRVHGRLMAIFQDKFKQRYE  136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GQH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GQH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GQH)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5gqh)
 
  Sites
(no "Sites" information available for 5gqh)
 
  Cis Peptide Bonds
    Arg A:193 - Gln A:194   [ RasMol ]  
    Arg A:884 - Pro A:885   [ RasMol ]  
    Asn A:879 - Pro A:880   [ RasMol ]  
    Asp A:145 - Ala A:146   [ RasMol ]  
    Asp A:439 - Pro A:440   [ RasMol ]  
    Glu A:179 - Thr A:180   [ RasMol ]  
    Gly A:140 - Lys A:141   [ RasMol ]  
    Gly A:162 - Pro A:163   [ RasMol ]  
    Gly A:443 - Ala A:444   [ RasMol ]  
    Leu A:237 - Pro A:238   [ RasMol ]  
    Phe A:921 - Pro A:922   [ RasMol ]  
    Pro A:163 - Gly A:164   [ RasMol ]  
    Pro A:263 - His A:264   [ RasMol ]  
    Thr A:180 - Gly A:181   [ RasMol ]  
    Val A:918 - Glu A:919   [ RasMol ]  
 

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 Related Entries

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