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(-) Description

Title :  MSMEG RIMP
 
Authors :  T. Chu, T. C. K. Lau
Date :  08 Jul 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rimp Mycobacterium Smegmatis, Ribosomal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Chu, T. C. K. Lau
Msmeg Rimp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBOSOME MATURATION FACTOR RIMP
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Strain: BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Expression System Vector Type: PLASMID
    Gene: RIMP, MSMEG_2624, MSMEI_2562
    Organism Scientific: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / MC(2)155)
    Organism Taxid: 246196
    Strain: ATCC 700084 / MC(2)155

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GL6)

(-) Sites  (0, 0)

(no "Site" information available for 5GL6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GL6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:44 -Pro A:45
2Arg B:44 -Pro B:45

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GL6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GL6)

(-) Exons   (0, 0)

(no "Exon" information available for 5GL6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhh...eeeeee....eeeeeeeeee..eeeeeeee..eeeeeeee...eeeeee.......hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gl6 A  12 DLPSQKQVIELLDGEFARAGYEIDDVVVNAATRPARITIVADGDKGLDLDAVAMLSRLASGLLDTVDTGDTPYVLEVTSPGVDRPLTTEKHFRRARGRKAELSLADGSSLTARLGGTDGDQVNVVVAQGKDFAVRQIPLREITKAVVQVEFSPPNRRELELAEQTGKGA 180
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171         


Chain B from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhh.......eeeeee.........hhhhhhhh...eeeeee....eeeeeeeeee..eeeeeeee..eeeeeeee...eeeeee.......hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gl6 B  12 DLPSQKQVIELLDGEFARAGYEIDDVVVNAATRPARITIVADGDKGLDLDAVAMLSRLASGLLDTVDTGDTPYVLEVTSPGVDRPLTTEKHFRRARGRKAELSLADGSSLTARLGGTDGDQVNVVVAQGKDFAVRQIPLREITKAVVQVEFSPPNRRELELAEQTGKGA 180
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GL6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GL6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GL6)

(-) Gene Ontology  (0, 0)

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  Cis Peptide Bonds
    Arg A:44 - Pro A:45   [ RasMol ]  
    Arg B:44 - Pro B:45   [ RasMol ]  
 
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