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(-) Description

Title :  GADS SH2 DOMAIN/CD28-DERIVED PEPTIDE COMPLEX
 
Authors :  S. Inaba, N. Numoto, H. Morii, S. Ogawa, T. Ikura, R. Abe, N. Ito, M. Oda
Date :  30 Jun 16  (Deposition) - 14 Dec 16  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Antigens, Phosphopeptides, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Inaba, N. Numoto, S. Ogawa, H. Morii, T. Ikura, R. Abe, N. Ito, M. Oda
Crystal Structures And Thermodynamic Analysis Reveal Distinct Mechanisms Of Cd28 Phosphopeptide Binding To The Src Homology 2 (Sh2) Domains Of Three Adaptor Proteins
J. Biol. Chem. V. 292 1052 2017
PubMed-ID: 27927989  |  Reference-DOI: 10.1074/JBC.M116.755173

(-) Compounds

Molecule 1 - GRB2-RELATED ADAPTER PROTEIN 2
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX-4T-2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 58-155
    Gene: GRAP2, GADS, GRB2L, GRID
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADAPTER PROTEIN GRID,GRB-2-LIKE PROTEIN,GRB2L,GRBLG,GRBX, GRF40 ADAPTER PROTEIN,GRF-40,GROWTH FACTOR RECEPTOR-BINDING PROTEIN, HEMATOPOIETIC CELL-ASSOCIATED ADAPTER PROTEIN GRPL,P38,PROTEIN GADS, SH3-SH2-SH3 ADAPTER MONA
 
Molecule 2 - T-CELL-SPECIFIC SURFACE GLYCOPROTEIN CD28
    Chains: B, D
    Engineered: YES
    Fragment: UNP RESIDUES 189-196
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TP44
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PTR1Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (0, 0)

(no "Site" information available for 5GJH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GJH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GJH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GJH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GJH)

(-) Exons   (0, 0)

(no "Exon" information available for 5GJH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:97
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhh.....eeeee.......eeeeee....eeeeeeee.....ee....ee.hhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 5gjh A  56 GSWFHEGLSRHQAENLLMGKEVGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDNKGNYFLWTEKFPSLNKLVDYYRTNSISRQKQIFLRDRTRED 152
                                    65        75        85        95       105       115       125       135       145       


Chain B from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5gjh B 189 SDyMNMTP 196
                              |     
                            191-PTR 


Chain C from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhh.....eeeee.......eeeeee....eeeeeeee.....ee....ee.hhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 5gjh C  57 SWFHEGLSRHQAENLLMGKEVGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDNKGNYFLWTEKFPSLNKLVDYYRTNSISRQKQIFLRDRTRED 152
                                    66        76        86        96       106       116       126       136       146      


Chain D from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5gjh D 189 SDyMNMTP 196
                              |     
                            191-PTR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GJH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GJH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GJH)

(-) Gene Ontology  (52, 57)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CD28_HUMAN | P10747: 1yjd 3wa4 5aul 5gji

(-) Related Entries Specified in the PDB File

5gji