Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)NMR Structure - model 1
(-)NMR Structure - all models
collapse expand < >
Image NMR Structure - model 1
NMR Structure - model 1  (Jmol Viewer)
Image NMR Structure - all models
NMR Structure - all models  (Jmol Viewer)

(-) Description

Title :  SOLUTION NMR STRUCTURE OF HUMANIN CONTAINING A D-ISOMERIZED SERINE RESIDUE
 
Authors :  K. Furuita, T. Sugiki, N. Alsanousi, T. Fujiwara, C. Kojima
Date :  25 Jun 16  (Deposition) - 20 Jul 16  (Release) - 10 Aug 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  X  (20x)
NMR Structure *:  X  (1x)
Keywords :  D-Ser, Alzheimer Disease, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Alsanousi, T. Sugiki, K. Furuita, M. So, Y. H. Lee, T. Fujiwara, C. Kojima
Solution Nmr Structure And Inhibitory Effect Against Amyloid-Beta Fibrillation Of Humanin Containing A D-Isomerized Serine Residue
Biochem. Biophys. Res. Commun. V. 477 647 2016
PubMed-ID: 27349871  |  Reference-DOI: 10.1016/J.BBRC.2016.06.114

(-) Compounds

Molecule 1 - HUMANIN
    ChainsX
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHUMANIN MITOCHONDRIAL,HNM
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)X
NMR Structure * (1x)X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1DSN1Mod. Amino AcidD-SERINE
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1DSN1Mod. Amino AcidD-SERINE

(-) Sites  (0, 0)

(no "Site" information available for 5GIW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GIW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GIW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GIW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GIW)

(-) Exons   (0, 0)

(no "Exon" information available for 5GIW)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain X from PDB  Type:PROTEIN  Length:24
                                                       
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                  5giw X  1 MAPRGFSCLLLLTxEIDLPVKRRA 24
                                    10   |    20    
                                        14-DSN      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GIW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GIW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GIW)

(-) Gene Ontology  (12, 12)

NMR Structure(hide GO term definitions)

 Visualization

(-) Interactive Views

NMR Structure
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    DSN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 5giw)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5giw)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5giw
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  HUNIN_HUMAN | Q8IVG9
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  HUNIN_HUMAN | Q8IVG9
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HUNIN_HUMAN | Q8IVG91y32 2gd3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5GIW)