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(-) Description

Title :  STRUCTURE OF THE ARGONAUTE PROTEIN FROM METHANOCALDCOCCUS JANASCHII
 
Authors :  S. Schneider, C. A. Oellig, R. Keegan, D. Grohmann, A. Zander, S. Willko
Date :  03 Jun 16  (Deposition) - 08 Feb 17  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Argonaute, Bacterial Defense (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Willkomm, C. A. Oellig, A. Zander, T. Restle, R. Keegan, D. Grohmann S. Schneider
Structural And Mechanistic Insights Into An Archaeal Dna-Guided Argonaute Protein.
Nat Microbiol V. 2 17035 2017
PubMed-ID: 28319084  |  Reference-DOI: 10.1038/NMICROBIOL.2017.35

(-) Compounds

Molecule 1 - ARGONAUTE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:289 , LEU A:292 , ILE A:295 , ASN A:297BINDING SITE FOR RESIDUE MG A 1714
2AC2SOFTWAREARG A:529 , ARG A:530 , LYS A:706BINDING SITE FOR RESIDUE TRS A 1715

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5G5S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5G5S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5G5S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5G5S)

(-) Exons   (0, 0)

(no "Exon" information available for 5G5S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:692
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeeeee.eee.hhhhh..eeeeeee........hhhhhhhhh..eeee....eeee..........eeeeeeee.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeeeee..hhhhhh..hhhhhhh....eeee..eeeeeeeeee....hhhhhhhhhhhhhhhh...hhhhhhhhh.........ee.......hhh.eeeeee....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......eeeeeee.....eeee.....eeee.hhhhhhhhhh...................eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eeee...hhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeehhhhhh...hhhhhhhhhhhhhhh.....ee.......eeeeee......eeeeeeeee....eeeeeeee........hhhhhhhhhhhh........eeeeee....hhhhhhhhhhhhhhhh.eeeeeeee.............eeeee..eeeee..........eeeeeeeeee..eeeee..hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhh....hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5g5s A  -1 FTMVLNKVTYKINAYKIKEEFIPKEVHFYRIKSFVNEAFNFYRFVNFYGGMIINKKDKSFVLPYKVDNIPIDIEYIKSLKLEYVKPEIAEKLVRGYLKSVHKIEPELSRIIKENIKVESYCEYEVKKHDGDYYLILNFRHTASITKHLWDFVNRDKALLEEYVGKKIIFKPNPKVRYTISLVDAPNPQKIEEIMSHIIKYYKWSEDMVKSTFGEIDYNQPIMYCEEILEPFAPQFCNLVFYMDELDSYILKELQSYWRLSNENKGKIINEIAKKLRFIDNTPKELEFMKFNNTPLLVKDVNKNPTKIYSTNTLFTWIYNQNAKIYLPYDVPEIIRNKNLLTYILIDEEIKDELKAIKDKVNKMFRNYNKIANKTELPKFNYANRWKYFSTDDIRGIIKEIKSEFNDEICFALIIGKEKYKDNDYYEILKKQLFDLKIISQNILWENWRKDDKGYMTNNLLIQIMGKLGIKYFILDSKTPYDYIMGLDTGLNHRVGGCTVVYDSEGKIRRIQPIETPAPGERLHLPYVIEYLENKANIDMENKNILFLRDGFIQNSERNDLKEISKELNSNIEVISIRKNNKYKVFTSDYRIGSVFGNDGIFLPHKTPFGSNPVKLSTWLRFNCGNEEGLKINESIMQLLYDLTKMNYSALYGEGRYLRIPAPIHYADKFVKALGKNWKIDEELLKHGFLYFI 713
                                     8        18        28        38        48        58       |79        89        99       109       119 ||    137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507|      521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711  
                                                                                              66|                                        121|                                                                                                                                                                                                                                                                                                                                                                                      507|                                                                                                                                                                                                         
                                                                                               78                                         130                                                                                                                                                                                                                                                                                                                                                                                       512
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5G5S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5G5S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5G5S)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        Y1321_METJA | Q58717: 5g5t

(-) Related Entries Specified in the PDB File

5g5t STRUCTURE OF THE ARGONAUTE PROTEIN FROM METHANOCALDCOCCUS JANASCHII IN COMPLEX WITH GUIDE DNA