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(-) Description

Title :  BREAKING DOWN THE WALL: MUTATION OF THE TYROSINE GATE OF THE UNIVERSAL ESCHERICHIA COLI FIMBRIAL ADHESIN FIMH
 
Authors :  J. Bouckaert
Date :  21 Feb 16  (Deposition) - 30 Nov 16  (Release) - 15 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Cell Adhesion, Bacterial Adhesin, Type 1 Fimbriae, Urinary Tract Infection, Variable Immunoglobulin Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rabbani, E. M. Krammer, G. Roos, A. Zalewski, R. Preston, S. Eid, P. Zihlmann, M. Prevost, M. F. Lensink, A. Thompson, B. Ernst, J. Bouckaert
Mutation Of Tyr137 Of The Universal Escherichia Coli Fimbrial Adhesin Fimh Relaxes The Tyrosine Gate Prior To Mannose Binding.
Iucrj V. 4 7 2017
PubMed-ID: 28250938  |  Reference-DOI: 10.1107/S2052252516016675

(-) Compounds

Molecule 1 - TYPE 1 FIMBIRAL ADHESIN FIMH
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C43
    Expression System Vector Type: PLASMID
    Fragment: FIMH LECTIN DOMAIN, RESIDUES 22-179
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 364106
    Strain: UTI89

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
13X88Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
13X81Ligand/IonBIPHENYL-4-YL ALPHA-D-MANNOPYRANOSIDE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:1 , ILE A:13 , ASN A:46 , ASP A:47 , TYR A:48 , ILE A:52 , ASP A:54 , GLN A:133 , ASN A:135 , TYR A:137 , ASP A:140 , HOH A:422 , PRO B:26 , ASP B:153 , VAL B:155BINDING SITE FOR RESIDUE 3X8 A 182
2AC2SOFTWAREPRO A:26 , ASP A:153 , VAL A:155 , PHE B:1 , ILE B:13 , ASN B:46 , ASP B:47 , TYR B:48 , ILE B:52 , ASP B:54 , GLN B:133 , ASN B:135 , TYR B:137 , ASP B:140 , PHE B:142 , HOH B:437BINDING SITE FOR RESIDUE 3X8 B 182
3AC3SOFTWAREPHE C:1 , ILE C:13 , ASN C:46 , ASP C:47 , TYR C:48 , ILE C:52 , ASP C:54 , GLN C:133 , ASN C:135 , TYR C:137 , ASP C:140 , HOH C:427 , PRO D:26 , VAL D:27 , ASP D:153 , VAL D:155BINDING SITE FOR RESIDUE 3X8 C 182
4AC4SOFTWAREPRO C:26 , ASP C:153 , PHE D:1 , ILE D:13 , ASN D:46 , ASP D:47 , TYR D:48 , ILE D:52 , ASP D:54 , GLN D:133 , ASN D:135 , TYR D:137 , ASP D:140 , PHE D:142 , HOH D:421BINDING SITE FOR RESIDUE 3X8 D 182
5AC5SOFTWAREPHE E:1 , ILE E:13 , ASN E:46 , ASP E:47 , TYR E:48 , ILE E:52 , ASP E:54 , GLN E:133 , ASN E:135 , TYR E:137 , ASP E:140 , HOH E:411 , PRO F:26 , ASP F:153BINDING SITE FOR RESIDUE 3X8 E 182
6AC6SOFTWAREPRO E:26 , VAL E:27 , ASP E:153 , VAL E:155 , PHE F:1 , ILE F:13 , ASN F:46 , ASP F:47 , TYR F:48 , ILE F:52 , ASP F:54 , GLN F:133 , ASN F:135 , TYR F:137 , ASP F:140 , PHE F:142 , HOH F:410 , HOH F:429BINDING SITE FOR RESIDUE 3X8 F 182
7AC7SOFTWAREPHE G:1 , ILE G:13 , ASN G:46 , ASP G:47 , TYR G:48 , ILE G:52 , ASP G:54 , GLN G:133 , ASN G:135 , ASP G:140 , PHE G:142 , PRO H:26 , ASP H:153 , VAL H:155BINDING SITE FOR RESIDUE 3X8 G 182
8AC8SOFTWAREPRO G:26 , VAL G:155 , PHE H:1 , ASN H:46 , ASP H:47 , TYR H:48 , ILE H:52 , ASP H:54 , GLN H:133 , ASN H:135 , TYR H:137 , ASP H:140BINDING SITE FOR RESIDUE 3X8 H 182

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:3 -A:44
2B:3 -B:44
3H:3 -H:44

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Phe A:84 -Pro A:85
2Phe B:84 -Pro B:85
3Phe C:84 -Pro C:85
4Phe D:84 -Pro D:85
5Phe E:84 -Pro E:85
6Phe F:84 -Pro F:85
7Phe G:84 -Pro G:85
8Phe H:84 -Pro H:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FWR)

(-) Exons   (0, 0)

(no "Exon" information available for 5FWR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeee.........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr A   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain B from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr B   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain C from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeee.hhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr C   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain D from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr D   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain E from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeee.hhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr E   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain F from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeee.hhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr F   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain G from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeee.hhhhhheeeeeee..eeeee........eee.....ee..eeeeeee.....eeee....eeeeeeeeeee.....eeeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr G   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150        


Chain H from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....ee....eeeeeee...........eeee....eeee........eeeeeeeeeehhhhhhheeeeeee..eeeee........eee.........eeeeeee.....eeee....eeeeeeeeeee......eeeeeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwr H   1 FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYANNDVVVPT 158
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FWR)

(-) Gene Ontology  (2, 2)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        I6BD60_SHIFL | I6BD60: 5fx3

(-) Related Entries Specified in the PDB File

5fx3 BREAKING DOWN THE WALL: MUTATION OF THE TYROSINE GATE OF THE UNIVERSAL ESCHERICHIA COLI FIMBRIAL ADHESIN FIMH