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(-) Description

Title :  STRUCTURE OF USP7 CATALYTIC DOMAIN AND THREE UBL-DOMAINS
 
Authors :  R. Q. Kim, W. J. Van Dijk, T. K. Sixma
Date :  17 Feb 16  (Deposition) - 22 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  C
Keywords :  Hydrolase, Deubiquitinase, Usp, Ubiquitin-Like (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Q. Kim, W. J. Van Dijk, T. K. Sixma
Structure Of Usp7 Catalytic Domain And Three Ubl-Domains Reveals A Connector Alpha-Helix With Regulatory Role.
J. Struct. Biol. V. 195 11 2016
PubMed-ID: 27183903  |  Reference-DOI: 10.1016/J.JSB.2016.05.005

(-) Compounds

Molecule 1 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7
    Chains: C
    EC Number: 3.4.19.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PGEX6P-1
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 207-882
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DEUBIQUITINATING ENZYME 7, HERPESVIRUS-ASSOCIATED UBIQUITIN -SPECIFIC PROTEASE, UBIQUITIN THIOESTERASE 7, UBIQUITIN-SPECIFIC-P ROCESSING PROTEASE 7, USP7

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FWI)

(-) Sites  (0, 0)

(no "Site" information available for 5FWI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FWI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FWI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FWI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FWI)

(-) Exons   (0, 0)

(no "Exon" information available for 5FWI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:662
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhheeeeeeeee.....eeeeeeee..eee......hhhhhhhhhhh.eee.....ee.....ee.eeeeeee.....eeeeee.......................eee.hhh..........eeeeeeeeeee.....eeeee.......eeeee..eeeeehhhhhhhhhh....eeeeeeeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeehhhhh...............eeeeee...hhhhhhhhhhhhhh.hhh.eeeeeeee.....eee...hhhhhh..hhhhhh....eeeeeeee.hhhhhh............eeeeeeeeee....eeeeeeeeeee...hhhhhhhhhhhhhh......eeeeeeee..eeee......hhhhhh.......eeeeee.hhhhhhh...hhhhhhhhhhheeeeeeee........eeeeee...hhhhhhhhhhhhh..hhh.eeeeee......eeeee......hhhhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwi C 210 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQL 881
                                   219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       461       471       481       491       501|      519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879  
                                                                                                                                                                                                                                                                                  458|                                     501|                                                                                                                                                                                                                                                                                                                                                                                   
                                                                                                                                                                                                                                                                                   461                                      510
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FWI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FWI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FWI)

(-) Gene Ontology  (30, 30)

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  5fwi
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  UBP7_HUMAN | Q93009
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UBP7_HUMAN | Q93009: 1nb8 1nbf 1yy6 1yze 2f1w 2f1x 2f1y 2f1z 2foj 2foo 2fop 2kvr 2xxn 2ylm 3mqr 3mqs 4jjq 4kg9 4m5w 4m5x 4pyz 4wph 4wpi 4yoc 4ysi 4z96 4z97 5c56 5c6d 5gg4 5j7t 5jtj 5jtv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FWI)