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(-) Description

Title :  THE CYTOPLASMIC DOMAIN OF ESSC
 
Authors :  M. Zoltner, W. M. A. V. Ng, T. Palmer, W. N. Hunter
Date :  01 Feb 16  (Deposition) - 02 Mar 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Secretion, Esx-1, P-Loop Containing Domain, Ftsk/Spoiiie, Protein Secretion, Atpase, Type Vii (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zoltner, W. M. A. V. Ng, J. J. Money, P. K. Fyfe, H. Kneuper, T. Palmer, W. N. Hunter
Essc: Domain Structures Inform On The Elusive Translocation Channel In The Type Vii Secretion System.
Biochem. J. V. 473 1941 2016
PubMed-ID: 27130157  |  Reference-DOI: 10.1042/BCJ20160257

(-) Compounds

Molecule 1 - ESSC
    Chains: A, B
    Engineered: YES
    Fragment: C-TERMINAL FRAGMENT, RESIDUES 966-1479
    Organism Scientific: GEOBACILLUS THERMODENITRIFICANS
    Organism Taxid: 33940
    Strain: NG80-2
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3ONA1Ligand/Ion3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2ATP-1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3ONA1Ligand/Ion3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3ONA-1Ligand/Ion3'-O-[2-(METHYLAMINO)BENZOYL]ADENOSINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1182 , GLY A:1183 , GLY B:1004 , TYR B:1005 , GLY B:1006 , LYS B:1007 , SER B:1008 , THR B:1009 , ASN B:1036 , ASP B:1105 , ILE B:1197 , LEU B:1199 , ASP B:1206 , HOH B:2002 , HOH B:2014BINDING SITE FOR RESIDUE ATP B2480
2AC2SOFTWARESER A:1002 , GLY A:1004 , TYR A:1005 , GLY A:1006 , LYS A:1007 , SER A:1008 , THR A:1009 , ASP A:1105 , GLN A:1196 , ILE A:1197 , LEU A:1199 , ASP A:1206 , PRO A:1449 , HOH A:2004 , HOH A:2005 , HOH A:2006 , HOH A:2018 , HOH A:2021 , HOH A:2037 , PRO B:1182 , GLY B:1183BINDING SITE FOR RESIDUE ONA A2480
3AC3SOFTWAREILE A:1171 , TYR A:1176 , GLU A:1352 , GLN A:1400 , PHE B:1168BINDING SITE FOR RESIDUE 1PE A2481

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FV0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FV0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FV0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FV0)

(-) Exons   (0, 0)

(no "Exon" information available for 5FV0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:508
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeee......eeee.....hhhhhhhhhhhhhhhhh....eeeeeee......hhhhhh..eeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee......hhhhhhhh.eeee....hhhhhhhh...hhhhh................eee.......hhhhhhhhhhhhhhhhhhhh................hhhhhhhh........eeeeeee.....eeeee......eeee..hhhhhhhhhhhhhhhhhhh.....eee................eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee.hhhhhhhh.hhhhhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhh....eee.........................eeee......eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fv0 A  968 ANAFPIGLKDESQSDYFYQWLEDGNIGIFGSAGYGKSTTMMTLLLSFAGAYNPAQLHYYIFDFGNSALLPLRQLPHTADYFRLDDEKKIEKFIKFMKEEMEQRKQRFMEKEVSTIKLYNALSEEKLPIIIVALDNFDVVKEEMPDFETQLIQYARDGQSLGIFFIMTATRVSGIRPPLMNNLKTKIVHYFIDSSEKFSLIGRTPYDVDPIPGRALIKKDNAALTQIYLPADGEDDIEVLENVKREMERLKEVYQHIPKPKPIPMLPPRLSMSVFTNTYVQHRASGFIPVGLDEQTVRPVAINMRTDPHCLIVGQSRKGKTNVVKVILESLLVQEPESIGLLDGIDRGLAGYANRDDITYIEAKERLAQWLNEADAVLQQREREYIQAVNENRATTLAWPPVVFVVDSLLRLQQETDSIMQGRIANMMKQYSHLGFHVFVAGNANEFVKGFDALTAELKQIRQAILVTKKSEQSLFALPFTRNEQEIEPGFGYFVVGGKDQKIQIPKVE 1479
                                   977||     991      1001      1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471        
                                    978|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                                     983                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:458
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee........eeeee......eeee.....hhhhhhhhhhhhhhhhh....eeeeeee.....hhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee......hhhhhhhh.eeee....hhhhhhh....hhhhh................eee.......hhhhhhhhhhhhhhhhhhhh...............hhhhhhhh.......eeeeeee.....eeeee......eeee..hhhhhhhhhhhhhhhhhhh....eeee................eee.hhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhh..hhhhhhhhhhhhh...eeeeeeehhhhhh.hhhhhhhh....eee.....................eeee......eee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fv0 B  968 ANAFPIGLKDEPELSQSDYFYQWLEDGNIGIFGSAGYGKSTTMMTLLLSFAGAYNPAQLHYYIFDFGNSALLPLRQLPHTADYFRLDDEKKIEKFIKFMKEEMLPIIIVALDNFDVVKEEMPDFETQLIQYARDGQSLGIFFIMTATRVSGIRPPLMNNLKTKIVHYFIDSSEKFSLIGRTPYDVDPIPGRALIKKDNAALTQIYLPADGEDDIEVLENVKREMERLKEVYQHIPKPKPIPMLPPLSMSVFTNTYVHRASGFIPVGLDEQTVRPVAINMRTDPHCLIVGQSRKGKTNVVKVILESLLVQEPESIGLLDGIDRGLAGYANRDDITYIERLAQWLNEADAVLQQREREYWPPVVFVVDSLLRLQETMQGRIANMMKQYSHLGFHVFVAGNANEFVGDALTAELKQIRQAILVTKKSEQSLFALPEQEIEPGFGYFVVGGKDQKIQIPKVE 1479
                                   977   ||  988       998      1008      1018      1028      1038      1048      1058      1068  ||  1103      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233    ||1244     |1255      1265      1275      1285      1295      1305      1315      1325      1338      1348      1371      1381 |||| 1395      1405      1415  ||| 1427      1437      1447 ||   1461      1471        
                                       981|                                                                                    1071|                                                                                                                                         1238|      1250|                                                                            1332|               1355|          1383|||                        1418||                       1449|                         
                                        983                                                                                     1097                                                                                                                                          1240       1252                                                                             1336                1369           1385||                         1420|                        1454                         
                                                                                                                                                                                                                                                                                                                                                                                                              1386|                          1422                                                     
                                                                                                                                                                                                                                                                                                                                                                                                               1390
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FV0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FV0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FV0)

(-) Gene Ontology  (5, 5)

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        ECCC_GEOTN | A4IKE7: 4lya 5fwh

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