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(-) Description

Title :  ECTODOMAIN OF CLEAVED WILD TYPE JR-FL ENVDCT TRIMER IN COMPLEX WITH PGT151 FAB
 
Authors :  J. H. Lee, A. B. Ward
Date :  29 Jan 16  (Deposition) - 09 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,H,L,M,N
Keywords :  Viral Protein, Hiv-1, Env, Pgt151, Broadly Neutralizing Antibody (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Lee, G. Ozorowski, A. B. Ward
Cryo-Em Structure Of A Native, Fully Glycosylated And Cleaved Hiv-1 Envelope Trimer
Science V. 351 1043 2016
PubMed-ID: 26941313  |  Reference-DOI: 10.1126/SCIENCE.AAD2450

(-) Compounds

Molecule 1 - HIV-1 ENVELOPE GLYCOPROTEIN GP160
    Chains: A, C, E
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Plasmid: PHCMV3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: GP120, RESIDUES 30-502
    Gene: ENV
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: GP120 OF JR-FL ENV
 
Molecule 2 - HIV-1 ENVELOPE GLYCOPROTEIN GP160
    Chains: B, D, F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Plasmid: PHCMV3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: GP41, RESIDUES 503-655
    Gene: ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
    Other Details: GP41 ECTODOMAIN OF JR-FL ENV
 
Molecule 3 - IMMUNOGLOBULIN G PGT151
    Chains: H, M
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Plasmid: PHCMV3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: FAB HEAVY CHAIN VARIABLE REGION, RESIDUES 1-218
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PGT151 CLEAVED INTO FAB
 
Molecule 4 - IMMUNOGLOBULIN G PGT151
    Chains: L, N
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293
    Expression System Common: HUMAN
    Expression System Plasmid: PHCMV3
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: FAB LIGHT CHAIN VARIABLE REGION, RESIDUES 1-214
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: PGT151 CLEAVED INTO FAB

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFHLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 213)

Asymmetric/Biological Unit (5, 213)
No.NameCountTypeFull Name
1BMA31Ligand/IonBETA-D-MANNOSE
2FUC5Ligand/IonALPHA-L-FUCOSE
3GAL9Ligand/IonBETA-D-GALACTOSE
4MAN36Ligand/IonALPHA-D-MANNOSE
5NAG132Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (213, 213)

Asymmetric Unit (213, 213)
No.NameEvidenceResiduesDescription
001AC1SOFTWAREGLU A:87 , ASN A:88 , NAG A:1089BINDING SITE FOR RESIDUE NAG A1088
002AC2SOFTWARENAG A:1088BINDING SITE FOR RESIDUE NAG A1089
003AC3SOFTWAREASN A:135BINDING SITE FOR RESIDUE NAG A1135
004AC4SOFTWAREASN A:156 , CYS A:157 , SER A:158 , TYR A:173 , NAG A:1157BINDING SITE FOR RESIDUE NAG A1156
005AC5SOFTWARETYR A:173 , NAG A:1156 , BMA A:1158BINDING SITE FOR RESIDUE NAG A1157
006AC6SOFTWARENAG A:1157BINDING SITE FOR RESIDUE BMA A1158
007AC7SOFTWAREASN A:160 , NAG A:1161BINDING SITE FOR RESIDUE NAG A1160
008AC8SOFTWARENAG A:1160 , BMA A:1162BINDING SITE FOR RESIDUE NAG A1161
009AC9SOFTWARENAG A:1161BINDING SITE FOR RESIDUE BMA A1162
010BC1SOFTWAREASN A:229 , ASN A:241 , NAG A:1242BINDING SITE FOR RESIDUE NAG A1241
011BC2SOFTWARENAG A:1241 , BMA A:1243BINDING SITE FOR RESIDUE NAG A1242
012BC3SOFTWARENAG A:1242BINDING SITE FOR RESIDUE BMA A1243
013BC4SOFTWAREPRO A:212 , ARG A:252 , ASN A:262 , SER A:446 , NAG A:1263BINDING SITE FOR RESIDUE NAG A1262
014BC5SOFTWARENAG A:1262 , BMA A:1264BINDING SITE FOR RESIDUE NAG A1263
015BC6SOFTWARENAG A:1263 , MAN A:1265 , MAN A:1267BINDING SITE FOR RESIDUE BMA A1264
016BC7SOFTWAREBMA A:1264 , MAN A:1266BINDING SITE FOR RESIDUE MAN A1265
017BC8SOFTWAREMAN A:1265BINDING SITE FOR RESIDUE MAN A1266
018BC9SOFTWAREVAL A:65 , SER A:209 , GLU A:211 , BMA A:1264 , MAN A:1268BINDING SITE FOR RESIDUE MAN A1267
019CC1SOFTWAREILE A:439 , MAN A:1267BINDING SITE FOR RESIDUE MAN A1268
020CC2SOFTWAREASN A:276 , THR A:278 , ASN A:279 , NAG A:1277BINDING SITE FOR RESIDUE NAG A1276
021CC3SOFTWARENAG A:1276 , BMA A:1278BINDING SITE FOR RESIDUE NAG A1277
022CC4SOFTWARENAG A:1277BINDING SITE FOR RESIDUE BMA A1278
023CC5SOFTWAREASN A:295 , ARG A:444 , NAG A:1296BINDING SITE FOR RESIDUE NAG A1295
024CC6SOFTWARENAG A:1295BINDING SITE FOR RESIDUE NAG A1296
025CC7SOFTWAREASN A:301 , ILE A:323 , GLN A:442 , NAG A:1302BINDING SITE FOR RESIDUE NAG A1301
026CC8SOFTWARENAG A:1301BINDING SITE FOR RESIDUE NAG A1302
027CC9SOFTWAREHIS A:330 , ASN A:332 , THR A:415 , NAG A:1333BINDING SITE FOR RESIDUE NAG A1332
028DC1SOFTWARENAG A:1332 , BMA A:1334BINDING SITE FOR RESIDUE NAG A1333
029DC2SOFTWARENAG A:1333BINDING SITE FOR RESIDUE BMA A1334
030DC3SOFTWAREALA A:336 , ASN A:339 , LYS A:343 , TRP A:395 , NAG A:1340BINDING SITE FOR RESIDUE NAG A1339
031DC4SOFTWARENAG A:1339BINDING SITE FOR RESIDUE NAG A1340
032DC5SOFTWAREGLU A:354 , ASN A:355BINDING SITE FOR RESIDUE NAG A1355
033DC6SOFTWAREASN A:362 , NAG A:1363BINDING SITE FOR RESIDUE NAG A1362
034DC7SOFTWARENAG A:1362 , BMA A:1364BINDING SITE FOR RESIDUE NAG A1363
035DC8SOFTWARENAG A:1363BINDING SITE FOR RESIDUE BMA A1364
036DC9SOFTWAREASN A:386 , GLN A:389 , NAG A:1387BINDING SITE FOR RESIDUE NAG A1386
037EC1SOFTWARENAG A:1386 , BMA A:1388 , NAG A:1392BINDING SITE FOR RESIDUE NAG A1387
038EC2SOFTWARENAG A:1387BINDING SITE FOR RESIDUE BMA A1388
039EC3SOFTWARETHR A:388 , ASN A:392 , NAG A:1387 , NAG A:1393BINDING SITE FOR RESIDUE NAG A1392
040EC4SOFTWARETHR A:408 , NAG A:1392 , BMA A:1394BINDING SITE FOR RESIDUE NAG A1393
041EC5SOFTWARENAG A:1393BINDING SITE FOR RESIDUE BMA A1394
042EC6SOFTWAREASN A:397 , ASN A:401BINDING SITE FOR RESIDUE NAG A1397
043EC7SOFTWAREGLU A:293 , ASN A:448 , NAG A:1449BINDING SITE FOR RESIDUE NAG A1448
044EC8SOFTWARENAG A:1448BINDING SITE FOR RESIDUE NAG A1449
045EC9SOFTWAREASN B:616BINDING SITE FOR RESIDUE NAG B1600
046FC1SOFTWAREASN B:611 , SER B:613 , NAG B:1612 , FUC B:1624BINDING SITE FOR RESIDUE NAG B1611
047FC2SOFTWARENAG B:1611 , BMA B:1613 , FUC B:1624 , ASP M:53 , TRP M:55BINDING SITE FOR RESIDUE NAG B1612
048FC3SOFTWARENAG B:1612 , MAN B:1614 , MAN B:1619BINDING SITE FOR RESIDUE BMA B1613
049FC4SOFTWAREBMA B:1613 , NAG B:1617BINDING SITE FOR RESIDUE MAN B1614
050FC5SOFTWAREMAN B:1614BINDING SITE FOR RESIDUE NAG B1617
051FC6SOFTWAREBMA B:1613 , NAG B:1620 , NAG B:1622BINDING SITE FOR RESIDUE MAN B1619
052FC7SOFTWAREMAN B:1619 , GAL B:1621 , VAL M:57BINDING SITE FOR RESIDUE NAG B1620
053FC8SOFTWARENAG B:1620 , MAN E:1246 , ILE F:515 , GLY F:516 , HIS M:56 , VAL M:58BINDING SITE FOR RESIDUE GAL B1621
054FC9SOFTWAREMAN B:1619 , GAL B:1623 , ALA M:54 , SER M:70BINDING SITE FOR RESIDUE NAG B1622
055GC1SOFTWARENAG B:1622 , ARG M:19BINDING SITE FOR RESIDUE GAL B1623
056GC2SOFTWAREGLU B:641 , NAG B:1611 , NAG B:1612 , PHE F:519 , ASN M:100KBINDING SITE FOR RESIDUE FUC B1624
057GC3SOFTWAREASN B:625BINDING SITE FOR RESIDUE NAG B1625
058GC4SOFTWAREASN B:637 , NAG B:1638 , FUC B:1650BINDING SITE FOR RESIDUE NAG B1637
059GC5SOFTWARENAG B:1637 , BMA B:1639 , MAN B:1645 , NAG B:1646 , GLN M:97 , GLU M:98BINDING SITE FOR RESIDUE NAG B1638
060GC6SOFTWARENAG B:1638 , MAN B:1640 , MAN B:1645 , PHE M:96 , GLN M:97 , GLU M:98BINDING SITE FOR RESIDUE BMA B1639
061GC7SOFTWAREBMA B:1639 , NAG B:1641 , NAG B:1643BINDING SITE FOR RESIDUE MAN B1640
062GC8SOFTWAREMAN B:1640 , GAL B:1642 , PRO M:28BINDING SITE FOR RESIDUE NAG B1641
063GC9SOFTWARENAG B:1641BINDING SITE FOR RESIDUE GAL B1642
064HC1SOFTWAREMAN B:1640 , GAL B:1644 , ASP M:101 , PHE N:55BINDING SITE FOR RESIDUE NAG B1643
065HC2SOFTWARENAG B:1643 , PHE N:55 , SER N:56BINDING SITE FOR RESIDUE GAL B1644
066HC3SOFTWARENAG B:1638 , BMA B:1639 , NAG B:1646 , NAG B:1648 , ASN N:53BINDING SITE FOR RESIDUE MAN B1645
067HC4SOFTWARENAG B:1638 , MAN B:1645 , GAL B:1647BINDING SITE FOR RESIDUE NAG B1646
068HC5SOFTWARENAG B:1646BINDING SITE FOR RESIDUE GAL B1647
069HC6SOFTWAREMAN B:1645 , ASN N:53 , ARG N:54BINDING SITE FOR RESIDUE NAG B1648
070HC7SOFTWARENAG B:1637 , GLN F:552 , ARG M:100CBINDING SITE FOR RESIDUE FUC B1650
071HC8SOFTWAREGLU C:87 , ASN C:88 , NAG C:1089 , GLY D:527 , SER D:528BINDING SITE FOR RESIDUE NAG C1088
072HC9SOFTWARENAG C:1088 , BMA C:1090BINDING SITE FOR RESIDUE NAG C1089
073IC1SOFTWARENAG C:1089BINDING SITE FOR RESIDUE BMA C1090
074IC2SOFTWAREASN C:135 , NAG C:1136BINDING SITE FOR RESIDUE NAG C1135
075IC3SOFTWARENAG C:1135BINDING SITE FOR RESIDUE NAG C1136
076IC4SOFTWAREASN C:156 , SER C:158 , GLU C:172 , TYR C:173 , GLY C:321 , NAG C:1157BINDING SITE FOR RESIDUE NAG C1156
077IC5SOFTWARELYS C:171 , TYR C:173 , NAG C:1156BINDING SITE FOR RESIDUE NAG C1157
078IC6SOFTWAREASN C:160 , GLU C:168 , GLN C:170 , NAG C:1161BINDING SITE FOR RESIDUE NAG C1160
079IC7SOFTWARENAG C:1160 , BMA C:1162BINDING SITE FOR RESIDUE NAG C1161
080IC8SOFTWARENAG C:1161BINDING SITE FOR RESIDUE BMA C1162
081IC9SOFTWAREVAL C:85 , ASN C:229 , ASP C:230 , ASN C:241 , SER C:243 , NAG C:1242BINDING SITE FOR RESIDUE NAG C1241
082JC1SOFTWAREVAL C:85 , NAG C:1241 , BMA C:1243 , MAN C:1246BINDING SITE FOR RESIDUE NAG C1242
083JC2SOFTWARENAG C:1242 , MAN C:1244 , MAN C:1246 , MAN C:1452BINDING SITE FOR RESIDUE BMA C1243
084JC3SOFTWAREBMA C:1243BINDING SITE FOR RESIDUE MAN C1244
085JC4SOFTWARENAG C:1242 , BMA C:1243 , GAL F:1621BINDING SITE FOR RESIDUE MAN C1246
086JC5SOFTWAREPRO C:212 , VAL C:254 , ASN C:262 , ASN C:377 , SER C:446 , SER C:447 , NAG C:1263BINDING SITE FOR RESIDUE NAG C1262
087JC6SOFTWARENAG C:1262 , BMA C:1264BINDING SITE FOR RESIDUE NAG C1263
088JC7SOFTWARENAG C:1263 , MAN C:1265 , MAN C:1267BINDING SITE FOR RESIDUE BMA C1264
089JC8SOFTWAREBMA C:1264 , MAN C:1266BINDING SITE FOR RESIDUE MAN C1265
090JC9SOFTWAREMAN C:1265BINDING SITE FOR RESIDUE MAN C1266
091KC1SOFTWAREBMA C:1264 , MAN C:1268BINDING SITE FOR RESIDUE MAN C1267
092KC2SOFTWAREILE C:439 , ARG C:440 , MAN C:1267BINDING SITE FOR RESIDUE MAN C1268
093KC3SOFTWAREASN C:276 , THR C:278 , ASN C:279 , NAG C:1277BINDING SITE FOR RESIDUE NAG C1276
094KC4SOFTWARENAG C:1276 , BMA C:1278BINDING SITE FOR RESIDUE NAG C1277
095KC5SOFTWARENAG C:1277BINDING SITE FOR RESIDUE BMA C1278
096KC6SOFTWAREASN C:295 , ARG C:444 , NAG C:1296BINDING SITE FOR RESIDUE NAG C1295
097KC7SOFTWARENAG C:1295BINDING SITE FOR RESIDUE NAG C1296
098KC8SOFTWAREASN C:301 , THR C:303 , ILE C:323 , NAG C:1302BINDING SITE FOR RESIDUE NAG C1301
099KC9SOFTWARENAG C:1301 , BMA C:1303BINDING SITE FOR RESIDUE NAG C1302
100LC1SOFTWARENAG C:1302BINDING SITE FOR RESIDUE BMA C1303
101LC2SOFTWARETHR C:297 , ARG C:298 , HIS C:330 , ASN C:332 , NAG C:1333BINDING SITE FOR RESIDUE NAG C1332
102LC3SOFTWARENAG C:1332 , BMA C:1334BINDING SITE FOR RESIDUE NAG C1333
103LC4SOFTWARENAG C:1333BINDING SITE FOR RESIDUE BMA C1334
104LC5SOFTWAREALA C:336 , ASN C:339 , NAG C:1340BINDING SITE FOR RESIDUE NAG C1339
105LC6SOFTWARENAG C:1339BINDING SITE FOR RESIDUE NAG C1340
106LC7SOFTWAREGLU C:351 , GLU C:354 , ASN C:355 , NAG C:1356BINDING SITE FOR RESIDUE NAG C1355
107LC8SOFTWARENAG C:1355BINDING SITE FOR RESIDUE NAG C1356
108LC9SOFTWAREVAL C:360 , ASN C:362 , ARG C:469 , NAG C:1363BINDING SITE FOR RESIDUE NAG C1362
109MC1SOFTWARENAG C:1362 , BMA C:1364BINDING SITE FOR RESIDUE NAG C1363
110MC2SOFTWARENAG C:1363BINDING SITE FOR RESIDUE BMA C1364
111MC3SOFTWAREMET C:373 , ASN C:386 , NAG C:1387BINDING SITE FOR RESIDUE NAG C1386
112MC4SOFTWARENAG C:1386 , BMA C:1388 , NAG C:1392BINDING SITE FOR RESIDUE NAG C1387
113MC5SOFTWARENAG C:1387BINDING SITE FOR RESIDUE BMA C1388
114MC6SOFTWAREGLN C:389 , ASN C:392 , NAG C:1387 , NAG C:1393BINDING SITE FOR RESIDUE NAG C1392
115MC7SOFTWARENAG C:1392BINDING SITE FOR RESIDUE NAG C1393
116MC8SOFTWAREASN C:397BINDING SITE FOR RESIDUE NAG C1397
117MC9SOFTWARESER C:291 , ASN C:448 , NAG C:1449BINDING SITE FOR RESIDUE NAG C1448
118NC1SOFTWARENAG C:1448 , BMA C:1450 , MAN C:1454BINDING SITE FOR RESIDUE NAG C1449
119NC2SOFTWARENAG C:1449 , MAN C:1451 , MAN C:1453 , ASP L:1BINDING SITE FOR RESIDUE BMA C1450
120NC3SOFTWAREBMA C:1450 , MAN C:1452BINDING SITE FOR RESIDUE MAN C1451
121NC4SOFTWAREBMA C:1243 , MAN C:1451 , ASP L:1BINDING SITE FOR RESIDUE MAN C1452
122NC5SOFTWAREBMA C:1450 , MAN C:1454 , MAN C:1455BINDING SITE FOR RESIDUE MAN C1453
123NC6SOFTWARENAG C:1449 , MAN C:1453BINDING SITE FOR RESIDUE MAN C1454
124NC7SOFTWAREMAN C:1453BINDING SITE FOR RESIDUE MAN C1455
125NC8SOFTWAREASN D:616BINDING SITE FOR RESIDUE NAG D1600
126NC9SOFTWAREASN D:611 , SER D:613 , NAG D:1612 , FUC D:1613BINDING SITE FOR RESIDUE NAG D1611
127OC1SOFTWARENAG D:1611 , FUC D:1613BINDING SITE FOR RESIDUE NAG D1612
128OC2SOFTWARETRP D:614 , TYR D:638 , GLU D:641 , NAG D:1611 , NAG D:1612BINDING SITE FOR RESIDUE FUC D1613
129OC3SOFTWAREASN D:625 , NAG D:1626BINDING SITE FOR RESIDUE NAG D1625
130OC4SOFTWARENAG D:1625BINDING SITE FOR RESIDUE NAG D1626
131OC5SOFTWAREASN D:637 , NAG D:1638BINDING SITE FOR RESIDUE NAG D1637
132OC6SOFTWARENAG D:1637BINDING SITE FOR RESIDUE NAG D1638
133OC7SOFTWAREASN E:88 , NAG E:1089BINDING SITE FOR RESIDUE NAG E1088
134OC8SOFTWARENAG E:1088 , BMA E:1090BINDING SITE FOR RESIDUE NAG E1089
135OC9SOFTWARENAG E:1089BINDING SITE FOR RESIDUE BMA E1090
136PC1SOFTWAREASP E:133 , VAL E:134 , ASN E:135 , NAG E:1136BINDING SITE FOR RESIDUE NAG E1135
137PC2SOFTWARENAG E:1135BINDING SITE FOR RESIDUE NAG E1136
138PC3SOFTWAREASN E:156 , SER E:158 , TYR E:173 , NAG E:1157BINDING SITE FOR RESIDUE NAG E1156
139PC4SOFTWAREGLU E:321A , NAG E:1156 , BMA E:1158BINDING SITE FOR RESIDUE NAG E1157
140PC5SOFTWARENAG E:1157BINDING SITE FOR RESIDUE BMA E1158
141PC6SOFTWAREASN E:160 , VAL E:169 , NAG E:1161BINDING SITE FOR RESIDUE NAG E1160
142PC7SOFTWARENAG E:1160BINDING SITE FOR RESIDUE NAG E1161
143PC8SOFTWAREASN E:187BINDING SITE FOR RESIDUE NAG E1187
144PC9SOFTWAREVAL E:85 , ASN E:229 , ASN E:241 , NAG E:1242BINDING SITE FOR RESIDUE NAG E1241
145QC1SOFTWAREVAL E:85 , NAG E:1241 , BMA E:1243 , MAN E:1246BINDING SITE FOR RESIDUE NAG E1242
146QC2SOFTWARENAG E:1242 , MAN E:1244 , MAN E:1246 , MAN E:1452BINDING SITE FOR RESIDUE BMA E1243
147QC3SOFTWAREBMA E:1243 , MAN E:1245BINDING SITE FOR RESIDUE MAN E1244
148QC4SOFTWAREMAN E:1244BINDING SITE FOR RESIDUE MAN E1245
149QC5SOFTWAREGAL B:1621 , NAG E:1242 , BMA E:1243BINDING SITE FOR RESIDUE MAN E1246
150QC6SOFTWAREARG E:252 , VAL E:254 , LEU E:261 , ASN E:262 , ASN E:377 , SER E:446 , SER E:447 , NAG E:1263BINDING SITE FOR RESIDUE NAG E1262
151QC7SOFTWAREGLY E:379 , NAG E:1262 , BMA E:1264BINDING SITE FOR RESIDUE NAG E1263
152QC8SOFTWARENAG E:1263 , MAN E:1265 , MAN E:1267BINDING SITE FOR RESIDUE BMA E1264
153QC9SOFTWAREBMA E:1264 , MAN E:1266BINDING SITE FOR RESIDUE MAN E1265
154RC1SOFTWAREMAN E:1265 , SER N:67 , ASP N:70BINDING SITE FOR RESIDUE MAN E1266
155RC2SOFTWAREVAL E:65 , SER E:209 , GLU E:211 , BMA E:1264 , MAN E:1268BINDING SITE FOR RESIDUE MAN E1267
156RC3SOFTWAREILE E:439 , ARG E:440 , MAN E:1267BINDING SITE FOR RESIDUE MAN E1268
157RC4SOFTWAREASN E:276 , THR E:278 , ASN E:279 , NAG E:1277BINDING SITE FOR RESIDUE NAG E1276
158RC5SOFTWARENAG E:1276BINDING SITE FOR RESIDUE NAG E1277
159RC6SOFTWAREASN E:295 , NAG E:1296BINDING SITE FOR RESIDUE NAG E1295
160RC7SOFTWARENAG E:1295BINDING SITE FOR RESIDUE NAG E1296
161RC8SOFTWAREASN E:301 , ILE E:323 , GLN E:442 , NAG E:1302BINDING SITE FOR RESIDUE NAG E1301
162RC9SOFTWARENAG E:1301BINDING SITE FOR RESIDUE NAG E1302
163SC1SOFTWARETHR E:297 , HIS E:330 , ASN E:332 , THR E:413 , THR E:415 , NAG E:1333BINDING SITE FOR RESIDUE NAG E1332
164SC2SOFTWARENAG E:1332 , BMA E:1334BINDING SITE FOR RESIDUE NAG E1333
165SC3SOFTWARENAG E:1333BINDING SITE FOR RESIDUE BMA E1334
166SC4SOFTWAREALA E:336 , ASN E:339 , LYS E:343 , TRP E:395 , GLY E:410 , NAG E:1340BINDING SITE FOR RESIDUE NAG E1339
167SC5SOFTWARENAG E:1339BINDING SITE FOR RESIDUE NAG E1340
168SC6SOFTWAREARG E:350 , GLU E:351 , GLU E:354 , ASN E:355 , NAG E:1356BINDING SITE FOR RESIDUE NAG E1355
169SC7SOFTWARENAG E:1355BINDING SITE FOR RESIDUE NAG E1356
170SC8SOFTWAREASN E:362 , ARG E:469 , NAG E:1363BINDING SITE FOR RESIDUE NAG E1362
171SC9SOFTWARENAG E:1362BINDING SITE FOR RESIDUE NAG E1363
172TC1SOFTWAREASN E:386 , NAG E:1387BINDING SITE FOR RESIDUE NAG E1386
173TC2SOFTWARENAG E:1386 , BMA E:1388 , NAG E:1392BINDING SITE FOR RESIDUE NAG E1387
174TC3SOFTWARENAG E:1387 , MAN E:1390BINDING SITE FOR RESIDUE BMA E1388
175TC4SOFTWAREBMA E:1388BINDING SITE FOR RESIDUE MAN E1390
176TC5SOFTWAREGLN E:389 , ASN E:392 , NAG E:1387 , NAG E:1393BINDING SITE FOR RESIDUE NAG E1392
177TC6SOFTWARENAG E:1392 , BMA E:1394BINDING SITE FOR RESIDUE NAG E1393
178TC7SOFTWARENAG E:1393BINDING SITE FOR RESIDUE BMA E1394
179TC8SOFTWARELYS E:357 , ASN E:397BINDING SITE FOR RESIDUE NAG E1397
180TC9SOFTWAREASN E:448 , NAG E:1449BINDING SITE FOR RESIDUE NAG E1448
181UC1SOFTWARENAG E:1448 , BMA E:1450 , MAN E:1454BINDING SITE FOR RESIDUE NAG E1449
182UC2SOFTWARENAG E:1449 , MAN E:1451 , MAN E:1453BINDING SITE FOR RESIDUE BMA E1450
183UC3SOFTWAREBMA E:1450 , MAN E:1452BINDING SITE FOR RESIDUE MAN E1451
184UC4SOFTWAREBMA E:1243 , MAN E:1451BINDING SITE FOR RESIDUE MAN E1452
185UC5SOFTWAREBMA E:1450 , MAN E:1454 , MAN E:1455BINDING SITE FOR RESIDUE MAN E1453
186UC6SOFTWARENAG E:1449 , MAN E:1453BINDING SITE FOR RESIDUE MAN E1454
187UC7SOFTWAREMAN E:1453BINDING SITE FOR RESIDUE MAN E1455
188UC8SOFTWAREASN F:616BINDING SITE FOR RESIDUE NAG F1600
189UC9SOFTWAREASN F:611 , SER F:613 , NAG F:1612 , FUC F:1624BINDING SITE FOR RESIDUE NAG F1611
190VC1SOFTWARENAG F:1611 , BMA F:1613 , FUC F:1624 , TRP H:55BINDING SITE FOR RESIDUE NAG F1612
191VC2SOFTWARENAG F:1612 , MAN F:1614 , MAN F:1619 , TRP H:55BINDING SITE FOR RESIDUE BMA F1613
192VC3SOFTWAREBMA F:1613 , NAG F:1617BINDING SITE FOR RESIDUE MAN F1614
193VC4SOFTWAREMAN F:1614BINDING SITE FOR RESIDUE NAG F1617
194VC5SOFTWAREBMA F:1613 , NAG F:1620 , NAG F:1622BINDING SITE FOR RESIDUE MAN F1619
195VC6SOFTWAREMAN F:1619 , GAL F:1621 , VAL H:57BINDING SITE FOR RESIDUE NAG F1620
196VC7SOFTWAREMAN C:1246 , ILE D:515 , NAG F:1620 , HIS H:56 , VAL H:57 , VAL H:58BINDING SITE FOR RESIDUE GAL F1621
197VC8SOFTWAREMAN F:1619 , GAL F:1623BINDING SITE FOR RESIDUE NAG F1622
198VC9SOFTWARENAG F:1622 , ARG H:19 , GLU H:81BINDING SITE FOR RESIDUE GAL F1623
199WC1SOFTWAREPHE D:519 , TYR F:638 , GLU F:641 , NAG F:1611 , NAG F:1612BINDING SITE FOR RESIDUE FUC F1624
200WC2SOFTWAREASN F:625 , NAG F:1626BINDING SITE FOR RESIDUE NAG F1625
201WC3SOFTWARENAG F:1625BINDING SITE FOR RESIDUE NAG F1626
202WC4SOFTWAREASN F:637 , NAG F:1638 , FUC F:1650BINDING SITE FOR RESIDUE NAG F1637
203WC5SOFTWARENAG F:1637 , BMA F:1639 , MAN F:1645 , NAG F:1646 , GLU H:98BINDING SITE FOR RESIDUE NAG F1638
204WC6SOFTWARENAG F:1638 , MAN F:1640 , MAN F:1645 , GLU H:98BINDING SITE FOR RESIDUE BMA F1639
205WC7SOFTWAREBMA F:1639 , NAG F:1641 , NAG F:1643BINDING SITE FOR RESIDUE MAN F1640
206WC8SOFTWAREMAN F:1640 , GAL F:1642 , PRO H:28BINDING SITE FOR RESIDUE NAG F1641
207WC9SOFTWARENAG F:1641 , ASP H:26BINDING SITE FOR RESIDUE GAL F1642
208XC1SOFTWAREMAN F:1640 , GAL F:1644BINDING SITE FOR RESIDUE NAG F1643
209XC2SOFTWARENAG F:1643 , SER L:56BINDING SITE FOR RESIDUE GAL F1644
210XC3SOFTWARENAG F:1638 , BMA F:1639 , NAG F:1646 , NAG F:1648 , LYS L:30BINDING SITE FOR RESIDUE MAN F1645
211XC4SOFTWARENAG F:1638 , MAN F:1645BINDING SITE FOR RESIDUE NAG F1646
212XC5SOFTWAREMAN F:1645 , PHE L:49 , GLU L:50 , ASN L:53BINDING SITE FOR RESIDUE NAG F1648
213XC6SOFTWAREGLN D:551 , NAG F:1637 , ARG H:100CBINDING SITE FOR RESIDUE FUC F1650

(-) SS Bonds  (34, 34)

Asymmetric/Biological Unit
No.Residues
1A:54 -A:74
2A:119 -A:205
3A:126 -A:196
4A:131 -A:157
5A:218 -A:247
6A:228 -A:239
7A:296 -A:331
8A:378 -A:445
9A:385 -A:418
10B:598 -B:604
11C:54 -C:74
12C:119 -C:205
13C:126 -C:196
14C:131 -C:157
15C:218 -C:247
16C:228 -C:239
17C:296 -C:331
18C:378 -C:445
19C:385 -C:418
20D:598 -D:604
21E:54 -E:74
22E:119 -E:205
23E:126 -E:196
24E:131 -E:157
25E:218 -E:247
26E:228 -E:239
27E:296 -E:331
28E:378 -E:445
29E:385 -E:418
30F:598 -F:604
31H:22 -H:92
32L:23 -L:88
33M:22 -M:92
34N:23 -N:88

(-) Cis Peptide Bonds  (23, 23)

Asymmetric/Biological Unit
No.Residues
1Pro A:81 -Gln A:82
2Thr A:499 -Lys A:500
3Gln A:507 -Arg A:508
4Gly B:600 -Lys B:601
5His C:66 -Asn C:67
6Val C:68 -Trp C:69
7Val D:518 -Phe D:519
8Ser D:528 -Thr D:529
9Gly D:600 -Lys D:601
10Val E:65 -His E:66
11His E:66 -Asn E:67
12Asp E:78 -Pro E:79
13Thr E:123 -Pro E:124
14Val E:134 -Asn E:135
15Cys E:157 -Ser E:158
16Asn E:355 -Lys E:357
17Val F:518 -Phe F:519
18Gln F:552 -Asn F:553
19Gly F:600 -Lys F:601
20Arg H:1 -Val H:2
21Phe L:94 -Pro L:95
22Thr N:7 -Pro N:8
23Phe N:94 -Pro N:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FUU)

(-) Exons   (0, 0)

(no "Exon" information available for 5FUU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eee.....eeee.......hhhhhee......eee.....eeee....hhhhhhhhhhhhhhhhhhh....hhhhh..eeeee........eeeeeee..........eeeeeee...eeee.....eeee......eeee............eee....eeeeee.......eeee..eeee..........ee.eee.........eeee.........eeeeeeeeeeeeeee..eeeeeeeeee..eeeeeeeeee......eeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee.hhhhh.eee........eeeeeeee..eehhhhh..eeee.......eeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeeee..eeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fuu A   31 TEKLWVTVYYGVPVWKEATTTLFCASDEVHNVWATHACVPTDPNPQEVVLENVTEHFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCKDVNATERGEIKNCSFNITTSIRDEVQKEYALFYKLDVVPIDNNNTSYRLISCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNNNTTEGNTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQR  508
                                    40        50      ||66        76        86        96       106       116       126       136||     158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308||     320 |     329       339       349     ||360       370       380       390      |408 ||    419       429       439       449       459       469       479       489       499         
                                                     57|                                                                      137|                                                                                                                                                            309|      321A                               355|                                     397||| ||                                                                                                
                                                      64                                                                       150                                                                                                                                                             312                                          357                                      401|| ||                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                      402| ||                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                       408 ||                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                         410|                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                          412                                                                                                


Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5fuu B  521 GFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQRMLQLTVWGIKQLQARVLAVERYLGDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDRIWNNMTWMEWEREIDNYTSEIYTLIEESQNQQEKNEQELLELD  664
                                   530       540       550       560       570       580       590       600       610       620       630       640       650       660    


Chain C from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee....eee.....eee.......................eee.....eeee.hhhhhhhhhhhhhhhhhhhh.......hhhhh.ee.........eee................eeehhh.eee......eeee.hhhhh..ee............eee....eeeeee.......eeee..eeee..............ee.........eee..........eeeeeeeeeeeee....eeeeeeee.....eeeeeeeee......eeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee.hhhhh.eee......eeeeeeeee.eehhhhh....ee.........eeeeeeeeeeee........eeeeee....hhhhhhh....eeeeee..eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5fuu C   31 TEKLWVTVYYGVPVWKEATTTLFCASDAKEVHNVWATHACVPTDPNPQEVVLENVTEHFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCKDVNAGEIKNCSFNITTSIRDEVQKEYALFYKLDVVPIDNNNTSYRLISCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNNNEGNTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVV  506
                                    40        50        64        74        84        94       104       114       124       134 ||    159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309|      321|      330       340       350    || 361       371       381       391     ||412       422       432       442       452       462       472       482       492       502    
                                                       59|                                                                     136|                                                                                                                                                          309|      321A                               355|                                     397||||                                                                                              
                                                        64                                                                      152                                                                                                                                                           312                                          357                                      401|||                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                     409||                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                      410|                                                                                              
                                                                                                                                                                                                                                                                                                                                                                                       412                                                                                              


Chain D from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                    
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......hhhhhhhhhhhh.hhhhhhh............hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee........hhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fuu D  512 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQRMLQLTVWGIKQLQARVLAVERYLGDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDRIWNNMTWMEWEREIDNYTSEIYTLIEESQNQQEKNEQ  658
                                   521       531       541       551       561       571       581       591       601       611       621       631       641       651       


Chain E from PDB  Type:PROTEIN  Length:448
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eee.....eee........hhhhh..........ee.....eeee...hhhhhhhhhhhhhhhhhhhh..ee.......ee..........eeeeeeeee......eeeeeeeee...eee......eeee......eeee............eee....eeeeee.......eeee..eeee.............eee.........eeee.........eeeeeeeeeeeeeee...eeeeeeeee..eeeeeeeee.......eeee..hhhhhhhhhhhhhhhhhh....eee......hhhhhheeee....eeee.hhhhhh.ee.........eeeeeee..eehhhhh..eeee.......eeeeeeeeeeeeee...hhhhh.eeee.....hhhhhhhhhh.eeeeee..eeeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fuu E   31 TEKLWVTVYYGVPVWKEATTTLFCASDAEVHNVWATHACVPTDPNPQEVVLENVTEHFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCKDVNAERGEIKNCSFNITTSIRDEVQKEYALFYKLDVVPIDNNNTSYRLISCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQLKESVEINCTRPNNNTRKSIHIGPGRAFYTTGEIIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNNNTEGGNTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQ  507
                                    40        50       |65        75        85        95       105       115       125       135||     158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308||     320 |     329       339       349     ||360       370       380       390      |403|||    419       429       439       449       459       469       479       489       499        
                                                      58|                                                                     136|                                                                                                                                                            309|      321A                               355|                                     397|  |||                                                                                               
                                                       64                                                                      150                                                                                                                                                             312                                          357                                      401  |||                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                        404||                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                         410|                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                          412                                                                                               


Chain F from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                          
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhh.hhhhhhh..........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee........hhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fuu F  512 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQRMLQLTVWGIKQLQARVLAVERYLGDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDRIWNNMTWMEWEREIDNYTSEIYTLIEESQNQQEKNEQELLELD  664
                                   521       531       541       551       561       571       581       591       601       611       621       631       641       651       661   


Chain H from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee........eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee.......ee......eeee...eeee...eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fuu H    1 RVQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSS  113
                                    10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||||||100P||     108     
                                                                              52A                            82A||               100A|||||100J||||||||             
                                                                                                              82B|                100B|||||100K|||||||             
                                                                                                               82C                 100C|||||100L||||||             
                                                                                                                                    100D|||||100M|||||             
                                                                                                                                     100E|||| 100N||||             
                                                                                                                                      100F|||  100O|||             
                                                                                                                                       100G||   100P||             
                                                                                                                                        100H|    100Q|             
                                                                                                                                         100I     100R             


Chain L from PDB  Type:PROTEIN  Length:114
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee...eeee.....eeeeeee............eeeeee......eeeeee..ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                5fuu L    1 DIVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRISRVEAEDVGFYYCMQSKDFPLTFGGGTKVDLKRT  109
                                    10        20       27C||      35        45        55        65        75        85        95       105    
                                                     27A||||                                                                                  
                                                      27B|||                                                                                  
                                                       27C||                                                                                  
                                                        27D|                                                                                  
                                                         27E                                                                                  


Chain M from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eee.....eeeeeee...hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee................eee...eeee...eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fuu M    2 VQLVESGGGVVQPGKSVRLSCVVSDFPFSKYPMYWVRQAPGKGLEWVAAISGDAWHVVYSNSVQGRFLVSRDNVKNTLYLEMNSLKIEDTAVYRCARMFQESGPPRLDRWSGRNYYYYSGMDVWGQGTTVTVSSA  114
                                    11        21        31        41        51 |      60        70        80  |||   87        97   |||100G||||||100Q|      109     
                                                                             52A                            82A||               100A|||||100J||||||||              
                                                                                                             82B|                100B|||||100K|||||||              
                                                                                                              82C                 100C|||||100L||||||              
                                                                                                                                   100D|||||100M|||||              
                                                                                                                                    100E|||| 100N||||              
                                                                                                                                     100F|||  100O|||              
                                                                                                                                      100G||   100P||              
                                                                                                                                       100H|    100Q|              
                                                                                                                                        100I     100R              


Chain N from PDB  Type:PROTEIN  Length:112
                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..eee......eeeeeee....ee...ee.eeeeee......eeeee...ee.......eeeee...eeeeee........eeeeeee......ee...eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                5fuu N    2 IVMTQTPLSLSVTPGQPASISCKSSESLRQSNGKTSLYWYRQKPGQSPQLLVFEVSNRFSGVSDRFVGSGSGTDFTLRISRVEAEDVGFYYCMQSKDFPLTFGGGTKVDLKR  108
                                    11        21      |27D|       36        46        56        66        76        86        96       106  
                                                    27A||||                                                                                 
                                                     27B|||                                                                                 
                                                      27C||                                                                                 
                                                       27D|                                                                                 
                                                        27E
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FUU)

(-) Gene Ontology  (15, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg H:1 - Val H:2   [ RasMol ]  
    Asn E:355 - Lys E:357   [ RasMol ]  
    Asp E:78 - Pro E:79   [ RasMol ]  
    Cys E:157 - Ser E:158   [ RasMol ]  
    Gln A:507 - Arg A:508   [ RasMol ]  
    Gln F:552 - Asn F:553   [ RasMol ]  
    Gly B:600 - Lys B:601   [ RasMol ]  
    Gly D:600 - Lys D:601   [ RasMol ]  
    Gly F:600 - Lys F:601   [ RasMol ]  
    His C:66 - Asn C:67   [ RasMol ]  
    His E:66 - Asn E:67   [ RasMol ]  
    Phe L:94 - Pro L:95   [ RasMol ]  
    Phe N:94 - Pro N:95   [ RasMol ]  
    Pro A:81 - Gln A:82   [ RasMol ]  
    Ser D:528 - Thr D:529   [ RasMol ]  
    Thr A:499 - Lys A:500   [ RasMol ]  
    Thr E:123 - Pro E:124   [ RasMol ]  
    Thr N:7 - Pro N:8   [ RasMol ]  
    Val C:68 - Trp C:69   [ RasMol ]  
    Val D:518 - Phe D:519   [ RasMol ]  
    Val E:134 - Asn E:135   [ RasMol ]  
    Val E:65 - His E:66   [ RasMol ]  
    Val F:518 - Phe F:519   [ RasMol ]  
 

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  5fuu
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
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Access by UniProt ID/Accession number
  Q6BC19_9HIV1 | Q6BC19
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  Q75760_9HIV1 | Q75760
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
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Access by UniProt ID/Accession number
  Q6BC19_9HIV1 | Q6BC19
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  Q75760_9HIV1 | Q75760
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q6BC19_9HIV1 | Q6BC19: 5fyk
UniProtKB/TrEMBL
        Q75760_9HIV1 | Q75760: 1tjg 2b4c 2f5b 3tyg 4jm2 5fyk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FUU)