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(-) Description

Title :  SULFUR SAD PHASING OF CDC23NTERM: DATA COLLECTION WITH A TAILORED X-RAY BEAM SIZE AT 2.69 A WAVELENGTH (4.6 KEV)
 
Authors :  M. Cianci, M. R. Groves, D. Barford, T. R. Schneider
Date :  14 Jan 16  (Deposition) - 16 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sad Phasing, Sulfur, Soft X-Rays, Long Wavelength, Low Resolution, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Cianci, M. R. Groves, D. Barford, T. R. Schneider
Data Collection With A Tailored X-Ray Beam Size At 2. 69 A Wavelength (4. 6 Kev): Sulfur Sad Phasing Of Cdc23Nterm
Acta Crystallogr. , Sect. D V. 72 403 2016
PubMed-ID: 26960127  |  Reference-DOI: 10.1107/S2059798315010268

(-) Compounds

Molecule 1 - ANAPHASE-PROMOTING COMPLEX SUBUNIT 8
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERM, UNP RESIDUES 19-301
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 4896
    Other Details: SOURCE DETAILS ARE THE SAME AS 3ZN3
    Synonym: 20S CYCLOSOME/APC COMPLEX PROTEIN APC8,CELL UNTIMELY TORN PROTEIN 23,20S CYCLOSOME/APC COMPLEX PROTEIN APC8, CELL UNTIMELY TORN PROTEIN 23

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FTP)

(-) Sites  (0, 0)

(no "Site" information available for 5FTP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FTP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Met B:77 -Ala B:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FTP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FTP)

(-) Exons   (0, 0)

(no "Exon" information available for 5FTP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ftp A  21 REIRNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMTKIFYVYASHELHQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRL 285
                                    30        40        50      ||79        89        99       109       119       129||     155       165       175       185       195       205       215       225       235       245       255       265       275       285
                                                               57|                                                  130|                                                                                                                                          
                                                                77                                                   147                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh......hhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ftp B  20 LREIRNCLLKCISECSERGLVYAVRWAAEMLNGMNPMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSENREFYYISEVLESLHYQGNKDPYLLYLSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPSTHIMTKIFYVYASHELHQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRNILTNDPAENLYFQ 308
                                    29        39        49     || 80        90       100       110       120       130    || 156       166       176       186       196       206       216       226       236       246       256       266       276       296       306  
                                                              55|                                                       135|                                                                                                                                 284|             
                                                               77                                                        152                                                                                                                                  295
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FTP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FTP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FTP)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Met B:77 - Ala B:78   [ RasMol ]  
 

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 Related Entries

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UniProtKB/Swiss-Prot
        APC8_SCHPO | O94556: 3zn3

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