5FOQ - JenaLib

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Title :   ACETYLCHOLINESTERASE IN COMPLEX WITH C7653

Authors :   L. Berg, B. K. Mishra, D. C. Andersson, F. Ekstrom, A. Linusson

Date :   25 Nov 15 (Deposition) - 02 Mar 16 (Release) - 17 Aug 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase, Signaling Protein, Quantum Chemistry, Density Functional Theory, Drug Design (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Berg, B. K. Mishra, C. D. Andersson, F. Ekstrom, A. Linusson
The Nature Of Activated Non-Classical Hydrogen Bonds: A Case Study On Acetylcholinesterase-Ligand Complexes.
Chemistry V. 22 2672 2016
PubMed-ID: 26751405 | Reference-DOI: 10.1002/CHEM.201503973

Molecule 1 - ACETYLCHOLINESTERASE
	Chains	:	A, B
	EC Number	:	3.1.1.7
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Taxid	:	9606
	Fragment	:	CATALYTIC DOMAIN, 1-548
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	GC8	2	Ligand/Ion	2-(2,4-DICHLOROPHENOXY)-N-[4-(1-PIPERIDINYLMETHYL)PHENYL]ACETAMIDE
2	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	P15	1	Ligand/Ion	2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
4	PG0	4	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	GC8	1	Ligand/Ion	2-(2,4-DICHLOROPHENOXY)-N-[4-(1-PIPERIDINYLMETHYL)PHENYL]ACETAMIDE
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	P15	-1	Ligand/Ion	2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
4	PG0	2	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL

Biological Unit 2 (4, 5)

No.	Name	Count	Type	Full Name
1	GC8	1	Ligand/Ion	2-(2,4-DICHLOROPHENOXY)-N-[4-(1-PIPERIDINYLMETHYL)PHENYL]ACETAMIDE
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	P15	1	Ligand/Ion	2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
4	PG0	2	Ligand/Ion	2-(2-METHOXYETHOXY)ETHANOL

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:72 , ASP A:74 , GLY A:120 , GLY A:121 , TYR A:124 , GLU A:202 , TRP A:286 , TYR A:337 , PHE A:338 , TYR A:341 , HOH A:2121	BINDING SITE FOR RESIDUE GC8 A1543
02	AC2	SOFTWARE	ASP A:304 , GLY A:305 , SER A:309	BINDING SITE FOR RESIDUE PG0 A1544
03	AC3	SOFTWARE	ARG A:525 , THR A:528 , GLN B:527	BINDING SITE FOR RESIDUE PG0 A1545
04	AC4	SOFTWARE	TYR B:72 , ASP B:74 , GLY B:121 , TYR B:124 , GLU B:202 , TRP B:286 , TYR B:337 , PHE B:338 , TYR B:341 , HIS B:447 , HOH B:2066	BINDING SITE FOR RESIDUE GC8 B1544
05	AC5	SOFTWARE	TYR B:382 , P15 B:1547	BINDING SITE FOR RESIDUE PG0 B1545
06	AC6	SOFTWARE	ASP B:304 , SER B:309	BINDING SITE FOR RESIDUE PG0 B1546
07	AC7	SOFTWARE	LEU A:380 , GLN A:527 , PHE A:531 , PHE A:535 , LEU B:380 , HIS B:381 , THR B:528 , PG0 B:1545	BINDING SITE FOR RESIDUE P15 B1547
08	AC8	SOFTWARE	GLY A:345 , SER A:347 , ASN A:350 , LEU A:353	BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 350
09	AC9	SOFTWARE	ASN A:464	BINDING SITE FOR MONO-SACCHARIDE NAG A 701 BOUND TO ASN A 464
10	BC1	SOFTWARE	ASN B:350 , LEU B:353 , HOH B:2111	BINDING SITE FOR MONO-SACCHARIDE NAG B 601 BOUND TO ASN B 350

Asymmetric Unit

No.	Residues
1	A:69	-	A:96
2	A:257	-	A:272
3	A:409	-	A:529
4	B:69	-	B:96
5	B:257	-	B:272
6	B:409	-	B:529

Asymmetric Unit

No.	Residues
1	Tyr A:105	-	Pro A:106
2	Tyr B:105	-	Pro B:106
3	Ser B:497	-	Pro B:498

(no "SAP(SNP)/Variant" information available for 5FOQ)

(no "PROSITE Motif" information available for 5FOQ)

(no "Exon" information available for 5FOQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:535
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee..eeee.eeeee..eeeeeeeeee.....hhhhh............eee......ee..........hhhhhh......ee....eeeeeee.......eeeeeee...........hhhhhhhhhhhhhh.eeeee...hhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhh.....................hhhhhhhhh.....eeeeeee...hhhhhhhh............hhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.........hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....................eeeee.....eeee..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5foq A   1 EGREDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSEDCLYLNVWTPYPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPNGPWATVSAGEARRRATLLARLVGCNDTELIACLRTRPAQDLVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEALINTGDFQDLQVLVGVVKDEGSYFLVYGVPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTHLRDAMSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSLNLKPLEVRRGLRAQTCAFWNRFLPKLLSA 542
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250      |267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537     
                                                                                                                                                                                                                                                                                          257|                                                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                           265

Chain B from PDB  Type:PROTEIN  Length:534
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhh.eeee..eeee.eeeee..eeeeeeeeee.....hhhhh............eee......ee..........hhhhhh......ee....eeeeeee.......eeeeeee...........hhhhhhhhhhhhhh.eeeee...hhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhhhhh.eeeee..........eehhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhh............ee.......hhhhhhhhh.....eeeeeee...hhhhhh..............hhhhhhhhhhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.........hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....................eeeee.....eeee..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5foq B   4 EDPQLLVRVRGGQLRGIRLKAPGGPVSAFLGIPFAEPPVGSRRFMPPEPKRPWSGVLDATTFQNVCYQYVDTLYPGFEGTEMWNPNRELSEDCLYLNVWTPYPRPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPNGPWATVSAGEARRRATLLARLVGCNDTELIACLRTRPAQDLVDHEWHVLPQESIFRFSFVPVVDGDFLSDTPEALINTGDFQDLQVLVGVVKDEGSYFLVYGVPGFSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTHLRDAMSAVVGDHNVVCPVAQLAGRLAAQGARVYAYIFEHRASTLTWPLWMGVPHGYEIEFIFGLPLDPSLNYTTEERIFAQRLMKYWTNFARTGDPNDPRDSKSPQWPPYTTAAQQYVSLNLKPLEVRRGLRAQTCAFWNRFLPKLLSATA 544
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253   ||  270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540    
                                                                                                                                                                                                                                                                                       257|                                                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                        265

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5FOQ)

(no "CATH Domain" information available for 5FOQ)

(no "Pfam Domain" information available for 5FOQ)

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	Cis Peptide Bonds
		Ser B:497 - Pro B:498	[ RasMol ]
		Tyr A:105 - Pro A:106	[ RasMol ]
		Tyr B:105 - Pro B:106	[ RasMol ]

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5fpp	STRUCTURE OF A PRE-REACTION TERNAY COMPLEX BETWEEN SARIN-ACETYLCHOLINESTERASE AND HI-6
5fpq	STRUCTURE OF HOMO SAPIENS ACETYLCHOLINESTERASE PHOSPHONYLATED BY SARIN.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)

SS Bonds (6, 6)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (47, 47)

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