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Title :   CRYSTAL STRUCTURE OF THE 6-CARBOXYHEXANOATE-COA LIGASE (BIOW)FROM BACILLUS SUBTILIS (PTCL4 DERIVATIVE)

Authors :   L. Moynie, M. Wang, D. J. Campopiano, J. H. Naismith

Date :   29 Oct 15 (Deposition) - 16 Nov 16 (Release) - 24 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.44

Chains :   Asym./Biol. Unit : A,B

Keywords :   Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Wang, L. Moynie, P. J. Harrison, V. Kelly, A. Piper, J. H. Naismith, D. J. Campopiano
Using The Pimeloyl-Coa Synthetase Adenylation Fold To Synthesize Fatty Acid Thioesters.
Nat. Chem. Biol. V. 13 660 2017
PubMed-ID: 28414710 | Reference-DOI: 10.1038/NCHEMBIO.2361

Compounds

Molecule 1 - 6-CARBOXYHEXANOATE--COA LIGASE
	Chains	:	A, B
	EC Number	:	6.2.1.14
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Synonym	:	PIMELOYL-COA SYNTHASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Asymmetric/Biological Unit (4, 12)

No.	Name	Count	Type	Full Name
1	MG	2	Ligand/Ion	MAGNESIUM ION
2	PPV	2	Ligand/Ion	PYROPHOSPHATE
3	PT	6	Ligand/Ion	PLATINUM (II) ION
4	WAQ	2	Ligand/Ion	PIMELOYL-AMP

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:31 , VAL A:122 , ARG A:123 , GLY A:124 , ALA A:125 , VAL A:144 , ARG A:145 , VAL A:146 , ARG A:170 , ILE A:171 , LEU A:177 , CYS A:192 , SER A:194 , ASP A:195 , ASP A:196 , TYR A:199 , THR A:201 , TYR A:203 , TYR A:211 , ARG A:213 , ARG A:227 , PPV A:1257 , MG A:1258 , MG A:1259 , HOH A:2006 , HOH A:2008	BINDING SITE FOR RESIDUE WAQ A 1256
02	AC2	SOFTWARE	HIS A:26 , SER A:28 , GLY A:29 , LYS A:49 , HIS A:53 , ARG A:145 , ASP A:195 , ASP A:196 , WAQ A:1256 , MG A:1258 , MG A:1259 , HOH A:2004 , HOH A:2005 , HOH A:2006 , HOH A:2007	BINDING SITE FOR RESIDUE PPV A 1257
03	AC3	SOFTWARE	GLU A:173 , WAQ A:1256 , PPV A:1257 , HOH A:2005 , HOH A:2006	BINDING SITE FOR RESIDUE MG A 1258
04	AC4	SOFTWARE	ASP A:195 , ASP A:196 , WAQ A:1256 , PPV A:1257 , HOH A:2004	BINDING SITE FOR RESIDUE MG A 1259
05	AC5	SOFTWARE	MET A:16	BINDING SITE FOR RESIDUE PT A 1260
06	AC6	SOFTWARE	MET A:209	BINDING SITE FOR RESIDUE PT A 1261
07	AC7	SOFTWARE	MET A:16 , ASN A:17	BINDING SITE FOR RESIDUE PT A 1262
08	AC8	SOFTWARE	GLU B:31 , VAL B:122 , ARG B:123 , GLY B:124 , ALA B:125 , VAL B:144 , ARG B:145 , VAL B:146 , ARG B:170 , ILE B:171 , LEU B:177 , CYS B:192 , TRP B:193 , SER B:194 , ASP B:195 , ASP B:196 , TYR B:199 , THR B:201 , TYR B:203 , TYR B:211 , ARG B:213 , ARG B:227 , PPV B:1258 , HOH B:2003 , HOH B:2004	BINDING SITE FOR RESIDUE WAQ B 1257
09	AC9	SOFTWARE	HIS B:26 , SER B:28 , GLY B:29 , LYS B:49 , HIS B:53 , ARG B:145 , ASP B:195 , ASP B:196 , WAQ B:1257 , HOH B:2002	BINDING SITE FOR RESIDUE PPV B 1258
10	BC1	SOFTWARE	MET B:16 , ASN B:17 , LYS B:25	BINDING SITE FOR RESIDUE PT B 1259
11	BC2	SOFTWARE	MET B:209	BINDING SITE FOR RESIDUE PT B 1260
12	BC3	SOFTWARE	MET B:16	BINDING SITE FOR RESIDUE PT B 1261

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhhhhh.......eeeeeeee.....eee....eeee...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeee....ee.............ee.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eeeeeee........eeeee...eeeee...........eeeeee....hhhhhhhhhhhh.eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fm0 A   6 TFYSVRMRASMNGSHGKHISGGERLIPFHEMKHTVNALLEKGLSHSRGKPDFMQIQFEEVHESIKTIQPLPVHTNEVSCPEEGQKLARLLLEKEGVSRDVIEKAYEQIPEWSDVRGAVLFDIHTGKRMDQTKEKGVRVSRMDWPDANFEKWALHSHVPAHSRIKEALALASKVSRHPAVVAELCWSDDPDYITGYVAGKKMGYQRITAMKEYGTEEGCRVFFIDGSNDVNTYIHDLEKQPILIEWEE 255
                                    15    ||  28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       
                                         20|                                                                                                                                                                                                                                       
                                          24

Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...eeeeeeeeeee..hhhhhhhhhhhhhhh.......eeeeeeee.....eee....eeee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....eeee....ee.............ee.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..eeeeeee........eeeee...eeeee...........eeeeee....hhhhhhhhhhhh.eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fm0 B   5 ETFYSVRMRASMNGGKHISGGERLIPFHEMKHTVNALLEKGLSHSRGKPDFMQIQFEEVHESIKTIQPLPVHTNEVSCPEEGQKLARLLLEKEGVSRDVIEKAYEQIPEWSDVRGAVLFDIHTGKRMDQTKEKGVRVSRMDWPDANFEKWALHSHVPAHSRIKEALALASKVSRHPAVVAELCWSDDPDYITGYVAGKKMGYQRITAMKEYGTEEGCRVFFIDGSNDVNTYIHDLEKQPILIEWEED 256
                                    14  ||    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       
                                       17|                                                                                                                                                                                                                                         
                                        23

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

5flg	CRYSTAL STRUCTURE OF THE 6-CARBOXYHEXANOATE-COA LIGASE (BIOW)FROM BACILLUS SUBTILIS IN COMPLEX WITH AMPPNP
5fll	CRYSTAL STRUCTURE OF THE 6-CARBOXYHEXANOATE-COA LIGASE (BIOW)FROM BACILLUS SUBTILIS IN COMPLEX WITH A PIMELOYL-ADENYLATE

Description