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(-) Description

Title :  THE FHUD PROTEIN FROM S.PSEUDINTERMEDIUS
 
Authors :  E. Malito
Date :  29 Oct 15  (Deposition) - 02 Dec 15  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metal Transport, Staphylococcal Disease, Siderophore, Transport, Iron, Class Iii Solute Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Abate, R. Cozzi, M. Maritan, P. Lo Surdo, D. Maione, E. Malito, M. J. Bottomley
Crystal Structure Of Fhud At 1. 6 Angstrom Resolution: A Ferrichrome-Binding Protein From The Animal And Human Pathogen Staphylococcus Pseudintermedius
Acta Crystallogr. , Sect. F V. 72 214 2016
PubMed-ID: 26919525  |  Reference-DOI: 10.1107/S2053230X16002272

(-) Compounds

Molecule 1 - FERRICHROME-BINDING PERIPLASMIC PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-15
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 27-307
    Organism Scientific: STAPHYLOCOCCUS PSEUDINTERMEDIUS
    Organism Taxid: 283734
    Strain: IV369-1041
    Synonym: FHUD

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 27)

Asymmetric Unit (3, 27)
No.NameCountTypeFull Name
17PG2Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2CD9Ligand/IonCADMIUM ION
3CL16Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
17PG1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
17PG1Ligand/Ion2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL
2CD-1Ligand/IonCADMIUM ION
3CL-1Ligand/IonCHLORIDE ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:210 , CL A:1290 , CL A:1291 , HOH A:2422BINDING SITE FOR RESIDUE CD A1282
02AC2SOFTWAREASP B:20 , CL B:1288 , CL B:1289BINDING SITE FOR RESIDUE CD B1282
03AC3SOFTWAREGLU A:4 , CL A:1289 , CL A:1294 , HOH A:2006 , ASP B:136BINDING SITE FOR RESIDUE CD A1283
04AC4SOFTWAREASP A:95 , HOH A:2195 , HOH A:2196BINDING SITE FOR RESIDUE CD A1284
05AC5SOFTWAREGLU A:209 , CL A:1287 , CL A:1288BINDING SITE FOR RESIDUE CD A1285
06AC6SOFTWAREGLU B:209 , CL B:1286BINDING SITE FOR RESIDUE CD B1283
07AC7SOFTWAREGLU B:210 , CL B:1290 , CL B:1291 , HOH B:2332BINDING SITE FOR RESIDUE CD B1284
08AC8SOFTWAREASP B:226 , CL B:1292 , CL B:1293 , HOH B:2291BINDING SITE FOR RESIDUE CD B1285
09AC9SOFTWAREASP A:20 , CL A:1292 , CL A:1293 , HOH A:2045 , HOH A:2364BINDING SITE FOR RESIDUE CD A1286
10BC1SOFTWAREGLU A:209 , CD A:1285BINDING SITE FOR RESIDUE CL A1287
11BC2SOFTWAREGLU B:209 , CD B:1283BINDING SITE FOR RESIDUE CL B1286
12BC3SOFTWARELYS A:208 , GLU A:209 , CD A:1285BINDING SITE FOR RESIDUE CL A1288
13BC4SOFTWAREALA B:13 , ASP B:107 , HOH B:2163BINDING SITE FOR RESIDUE CL B1287
14BC5SOFTWARELYS A:3 , GLU A:4 , CD A:1283BINDING SITE FOR RESIDUE CL A1289
15BC6SOFTWAREPRO A:207 , GLU A:210 , TYR A:214 , CD A:1282BINDING SITE FOR RESIDUE CL A1290
16BC7SOFTWAREGLU A:210 , CD A:1282BINDING SITE FOR RESIDUE CL A1291
17BC8SOFTWAREASP B:20 , CD B:1282 , CL B:1289BINDING SITE FOR RESIDUE CL B1288
18BC9SOFTWAREASP B:20 , LYS B:223 , GLN B:229 , ASN B:251 , CD B:1282 , CL B:1288BINDING SITE FOR RESIDUE CL B1289
19CC1SOFTWAREPRO B:207 , TYR B:214 , CD B:1284BINDING SITE FOR RESIDUE CL B1290
20CC2SOFTWAREASP A:20 , CD A:1286 , HOH A:2364 , HOH A:2366BINDING SITE FOR RESIDUE CL A1292
21CC3SOFTWARELYS A:18 , GLN A:229 , CD A:1286 , HOH A:2045 , HOH A:2376BINDING SITE FOR RESIDUE CL A1293
22CC4SOFTWAREGLU A:4 , LYS A:23 , CD A:1283 , HOH A:2004 , ASP B:136BINDING SITE FOR RESIDUE CL A1294
23CC5SOFTWAREGLU B:210 , CD B:1284BINDING SITE FOR RESIDUE CL B1291
24CC6SOFTWARECD B:1285 , HOH B:2288BINDING SITE FOR RESIDUE CL B1292
25CC7SOFTWAREASP B:226 , CD B:1285BINDING SITE FOR RESIDUE CL B1293
26CC8SOFTWARETHR B:34 , TYR B:108 , GLU B:162 , TYR B:169 , TYR B:171 , TRP B:175 , ARG B:177 , TYR B:259 , ASN B:260 , HOH B:2244 , HOH B:2245BINDING SITE FOR RESIDUE 7PG B1294
27CC9SOFTWAREPHE A:164 , TYR A:171 , TRP A:175 , ARG A:177 , TRP A:203 , TRP A:258 , HOH A:2317 , HOH A:2319BINDING SITE FOR RESIDUE 7PG A1295

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FLY)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:279 -Pro A:280
2Leu B:279 -Pro B:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FLY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FLY)

(-) Exons   (0, 0)

(no "Exon" information available for 5FLY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeee.....eee.hhhhhhhhhhh...eeeee.hhhhhhhhhhhh....ee...hhhhhhhh...eeeee....hhhhhhhhh.eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeee......hhhhhhh......hhhhhhhhh...eee.hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh..eeeeehhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fly A   3 KETKAFNLKTAKGEEKIDIPKDPKRIVVMAPTYAGGLKYLDANIVGVSDQVDQSPVLAKQFKDVDKVGAEDVEKVASLKPDLIITYNTDKNTDKLKKIAPTIAFDYAKYNYLEQQEAMGDIVGKSDEVKKWKADWEKQTAQDSKDIKAHLGDDTSVTIFEDFDKKIYAYGKNWGRGSEVLYQAFGLQMPKALDDATKKEGWTEVPKEEVGKYAGDVIITAKAKDAAQPEFQKTAMWQNLEAVQNKYAFNVDSSVYWYNDPYTLDVIRKDLKKQLLALPT 281
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272         


Chain B from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeee......eee.hhhhhhhhhhh...eeeee.hhhhhhhhhhhh...eee...hhhhhhhh...eeeee....hhhhhhhhh.eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee..eeeee......hhhhhhh......hhhhhhhhh...eee.hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh..eeeeehhhhh..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fly B   5 TKAFNLKTAKGEEKIDIPKDPKRIVVMAPTYAGGLKYLDANIVGVSDQVDQSPVLAKQFKDVDKVGAEDVEKVASLKPDLIITYNTDKNTDKLKKIAPTIAFDYAKYNYLEQQEAMGDIVGKSDEVKKWKADWEKQTAQDSKDIKAHLGDDTSVTIFEDFDKKIYAYGKNWGRGSEVLYQAFGLQMPKALDDATKKEGWTEVPKEEVGKYAGDVIITAKAKDAAQPEFQKTAMWQNLEAVQNKYAFNVDSSVYWYNDPYTLDVIRKDLKKQLLALPT 281
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FLY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FLY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FLY)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5FLY)

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