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(-) Description

Title :  STRUCTURE OF TRANSCRIBING MAMMALIAN RNA POLYMERASE II
 
Authors :  C. Bernecky, F. Herzog, W. Baumeister, J. M. Plitzko, P. Cramer
Date :  26 Oct 15  (Deposition) - 20 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,N,P,T
Keywords :  Transcription, Elongation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Bernecky, F. Herzog, W. Baumeister, J. M. Plitzko, P. Cramer
Structure Of Transcribing Mammalian Rna Polymerase Ii
Nature V. 529 551 2016
PubMed-ID: 26789250  |  Reference-DOI: 10.1038/NATURE16482

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE
    ChainsA
    EC Number2.7.7.6
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    TissueTHYMUS
 
Molecule 2 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
    ChainsB
    EC Number2.7.7.6
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymDNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE, DNA- DIRECTED RNA POLYMERASE II SUBUNIT B, RNA POLYMERASE II SUBUNIT 2, RNA POLYMERASE II SUBUNIT B2
    TissueTHYMUS
 
Molecule 3 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3
    ChainsC
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASE II SUBUNIT B3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT C
    TissueTHYMUS
 
Molecule 4 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4
    ChainsD
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASE II SUBUNIT B4, DNA-DIRECTED RNA POLYMERASE II SUBUNIT D, RNA POLYMERASE II 16 KDA SUBUNIT, RPB16
    TissueTHYMUS
 
Molecule 5 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1
    ChainsE
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASES I, II, AND III SUBUNIT ABC1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT E, RPB5 HOMOLOG
    TissueTHYMUS
 
Molecule 6 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
    ChainsF
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASES I, II, AND III SUBUNIT ABC2, DNA-DIRECTED RNA POLYMERASE II SUBUNIT F, RPB6 HOMOLOG
    TissueTHYMUS
 
Molecule 7 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7
    ChainsG
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASE II SUBUNIT B7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT G
    TissueTHYMUS
 
Molecule 8 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3
    ChainsH
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASES I, II, AND III SUBUNIT ABC3, DNA-DIRECTED RNA POLYMERASE II SUBUNIT H, DNA-DIRECTED RNA POLYMERASES I, AND III 17.1 KDA POLYPEPTIDE, RPB17, RPB8 HOMOLOG, HRPB8
    TissueTHYMUS
 
Molecule 9 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9
    ChainsI
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASE II SUBUNIT B9, DNA-DIRECTED RNA POLYMERASE II SUBUNIT I
    TissueTHYMUS
 
Molecule 10 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5
    ChainsJ
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASES I, II, AND III SUBUNIT ABC5, DNA-DIRECTED RNA POLYMERASE III SUBUNIT L
    TissueTHYMUS
 
Molecule 11 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
    ChainsK
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASE II SUBUNIT B11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT J
    TissueTHYMUS
 
Molecule 12 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4
    ChainsL
    Organism CommonBOVINE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymRNA POLYMERASES I, II, AND III SUBUNIT ABC4, DNA-DIRECTED RNA POLYMERASE II SUBUNIT K
    TissueTHYMUS
 
Molecule 13 - DNA, DNA-RNA ELONGATION SCAFFOLD
    ChainsN
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES
 
Molecule 14 - RNA, DNA-RNA ELONGATION SCAFFOLD
    ChainsP
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES
 
Molecule 15 - DNA, DNA-RNA ELONGATION SCAFFOLD
    ChainsT
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456789101112131415
Asymmetric/Biological Unit ABCDEFGHIJKLNPT

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2ZN8Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:71 , THR A:73 , CYS A:74 , CYS A:81 , HIS A:84BINDING SITE FOR RESIDUE ZN A2488
2AC2SOFTWARECYS A:111 , CYS A:114 , CYS A:154 , GLY A:183 , CYS A:184BINDING SITE FOR RESIDUE ZN A2489
3AC3SOFTWAREASP A:495 , ASP A:497 , ASP A:499 , C P:20BINDING SITE FOR RESIDUE MG A2490
4AC4SOFTWARECYS B:1119 , CYS B:1122 , CYS B:1137 , CYS B:1140BINDING SITE FOR RESIDUE ZN B2175
5AC5SOFTWARECYS C:88 , CYS C:90 , CYS C:94 , CYS C:97BINDING SITE FOR RESIDUE ZN C1272
6AC6SOFTWARECYS I:17 , CYS I:20 , CYS I:39 , CYS I:42BINDING SITE FOR RESIDUE ZN I1126
7AC7SOFTWARECYS I:86 , CYS I:89 , CYS I:114 , CYS I:119BINDING SITE FOR RESIDUE ZN I1127
8AC8SOFTWARECYS J:7 , CYS J:10 , CYS J:44 , CYS J:45BINDING SITE FOR RESIDUE ZN J1068
9AC9SOFTWARECYS L:19 , CYS L:22 , THR L:24 , CYS L:36 , CYS L:39BINDING SITE FOR RESIDUE ZN L1059

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FLM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:461 -Pro A:462
2Lys A:581 -Pro A:582

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FLM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FLM)

(-) Exons   (0, 0)

(no "Exon" information available for 5FLM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:1427
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee....hhhhhhhhh..................................................eeeeeeeeee...hhhhhhhhhhhh............hhhhhhhhhhh..hhhhhhhhhhhhhh...............eeeee..eeeee..eeeehhhhhhhhhhh.hhhhhhhh.......hhhh.eeeeeee........eee...eee.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.........eee..ee..hhhhhhh...hhhhhhh..ee...eeeeeeee.......eeee..hhhhhheeeee....hhhhhhhhhhhh......eeeee.....eee......hhhhh.....eeeee.....eeeee.....hhh.eeeeeeee.....eeehhhhhhhhh......eeeee...hhhhhhhhhhh..hhhhh.............hhhhhhhhhhhh...eehhhhhhhhhhh............eee....eehhhhhhhhh...............................eeee..eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhh..ee.ee..ee........................ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee.....eee.............eeee......hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhh..........hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...........hhhhhhhhhhh.......eeee...hhhhhhhhhhhhhhhhh........eeeeeeee...........hhhhhhhhhhh..........eeeeeeehhhhhhhh..hhhhhhhhhhhhhh..eeeee.......eeeeeeehhhhhh...hhhhhhhhhhhhhhhh.........eeeee........eeee.....eeee...eeeee..hhhhhhhh........ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhh..hhhhhhh...hhhhhhhhhhh..ee...hhhhhhhh..........eeeee..hhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5flm A   11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEHGGCGRYQPRIRRSGLELYAEWKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 1487
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150    || 185       195      |214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924       934       944       954       964       974       984       994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094      1104   || 1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480       
                                                                                                                                                                          155|                  202|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            1108|                                                                                                                                                    1267|                                                                                                                                                                                                                 
                                                                                                                                                                           181                   212                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             1115                                                                                                                                                     1278                                                                                                                                                                                                                 

Chain B from PDB  Type:PROTEIN  Length:1134
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...eee...eeeeeeeeeee...eee.....eee.hhhhhhhh....eeeeeeeeeeeee.....eeeeeeeeeeeeeee.............hhhhhhhh..........eee..eeee..eeeee....eeee......eeeeeeeeeee...eeeeeeeeeeee.....hhhhhhhh..eeee.......eehhhhhhhh...hhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhh.......hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh.............eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh.................ee....hhhhhhhhhheee...............hhhhh................eee.....ee.....hhhhhhhhhhh................eeeee..eeeeee.hhhhhhhhhhhhhhh........eeee......eeee.....eeeeeeeee..ee..hhhhhhhhhh......hhhhhhh...eeeeehhhhh...ee.hhhhhh...........ee..hhhhhh.hhhhhh.hhhh.hhhhhhhhhhhh..................eeee.......eehhhhhhhh.......eeeeeee...........eeeehhhhh.....eeeeeeeeee.........eee.............................ee....eee.eeee...eee..ee......eeeeeeeeee.....eeeeeeeeeee......eeee....eeeeeeee...............eee..hhhhhhh.hhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhh.....ee..............eeeeeeeeee...hhhhhh.........................eehhhhhhhhhhhhhhhhhhhhhh......eeeee.......ee......ee.........eeeee.hhhhhhhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5flm B   16 EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
                                    25        35        45        55        65  ||    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867      |890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170    
                                                                               68|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      874|                                                                                                                                                                                                                                                                                              
                                                                                81                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       888                                                                                                                                                                                                                                                                                              

Chain C from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee...eeeeeee..hhhhhhhhhhhh.....eeeeeeeeeeee....hhhhhhhhhhh............................eeeeeeee......eeee.hhhee.............eeeee....eeeeeeeeeee....hhhhh.....eee.............hhhhh.........................eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5flm C    2 PYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDV  271
                                    11        21        31        41        51        61        71        81        91       101       111       121       131||     154       164       174       184       194       204       214       224       234       244       254       264       
                                                                                                                                                            132|                                                                                                                             
                                                                                                                                                             146                                                                                                                             

Chain D from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................ee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                5flm D   14 EEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKRSFQ  141
                                    23        33        43        53        63        73        83        93       103       113       123       133        

Chain E from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhh..............ee...........eee.....eehhhhhhhhhhhhhhhh..eeeeee..eehhhhhhhhhhh....eeeeee.hhhh.hhhhh....eeee.hhhhhhhhhhhh..hhhhh.ee...hhhhhhhh.....eeeeee.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5flm E    2 DDEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLVQ  210
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201         

Chain F from PDB  Type:PROTEIN  Length:82
                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh...eeeeee.....eeeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                5flm F   46 QANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD  127
                                    55        65        75        85        95       105       115       125  

Chain G from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeehhhhh..hhhhhhhhhhhhhhh..ee...eeeeeeeeeeee..eee......eeeeeeeeeeee......eeeeeeeee...eeeeee..eeeeee........eee......eee......ee....eeeeeeeeeeee..eeeeeee......ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5flm G    1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLV  171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 

Chain H from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..........eeeeeeee......eeeeee..........eeeeeee............................eeeeeeeeeeee.........eeeeeeee..eeeeeeeehhhhh.....eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5flm H    2 AGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSRVYLLMKKLA  149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141        

Chain I from PDB  Type:PROTEIN  Length:114
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeee......eeee......eee....eeeeee.....hhhhh.hhhhhhh....ee............eeee.............eeee.......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                5flm I   12 VGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE  125
                                    21        31        41        51        61        71        81        91       101       111       121    

Chain J from PDB  Type:PROTEIN  Length:67
                                                                                                    
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhh...hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                5flm J    1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK   67
                                    10        20        30        40        50        60       

Chain K from PDB  Type:PROTEIN  Length:115
                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeee......eeeeeee..hhhhhhhhhhhhh....eeeeeee.......eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                5flm K    1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEG  115
                                    10        20        30        40        50        60        70        80        90       100       110     

Chain L from PDB  Type:PROTEIN  Length:44
                                                                             
               SCOP domains -------------------------------------------- SCOP domains
               CATH domains -------------------------------------------- CATH domains
               Pfam domains -------------------------------------------- Pfam domains
         Sec.struct. author .eeee......ee................ee........eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------- PROSITE
                 Transcript -------------------------------------------- Transcript
                5flm L   15 MIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR   58
                                    24        34        44        54    

Chain N from PDB  Type:DNA  Length:27
                                                            
                5flm N    1 GGCAGTACTAGTAAAGTACTTGAGCTT   39
                                    10  ||    32       
                                       13|             
                                        26             

Chain P from PDB  Type:RNA  Length:14
                                               
                5flm P    7 CAUAAAGACCAGGC   20
                                    16    

Chain T from PDB  Type:DNA  Length:39
                                                                        
                5flm T    1 AAGCTCAAGTACTTAAGCCTGGTCATTACTAGTACTGCC   39
                                    10        20        30         

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(-) Gene Ontology  (46, 153)

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 Related Entries

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