5FKH - JenaLib

Title :   SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CU

Authors :   L. Huang, D. M. J. Lilley

Date :   15 Oct 15 (Deposition) - 25 May 16 (Release) - 06 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym./Biol. Unit : A

Keywords :   Rna, Kink Turn, Rna Motif, Sam-I Riboswitch (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Huang, J. Wang, D. M. J. Lilley
A Critical Base Pair In K-Turns Determines The Conformational Class Adopted, And Correlates With Biological Function.
Nucleic Acids Res. V. 44 5390 2016
PubMed-ID: 27016741 | Reference-DOI: 10.1093/NAR/GKW201

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 16)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	A A:6 , U A:7 , C A:8 , G A:11 , A A:45 , A A:46 , C A:47 , U A:57 , G A:58 , C A:59 , U A:88	BINDING SITE FOR RESIDUE SAM A1095
02	AC2	SOFTWARE	G A:50 , A A:52	BINDING SITE FOR RESIDUE BA A1096
03	AC3	SOFTWARE	G A:11 , U A:64	BINDING SITE FOR RESIDUE BA A1097
04	AC4	SOFTWARE	G A:86	BINDING SITE FOR RESIDUE BA A1098
05	AC5	SOFTWARE	G A:1	BINDING SITE FOR RESIDUE BA A1099
06	AC6	SOFTWARE	G A:43	BINDING SITE FOR RESIDUE BA A1112
07	AC7	SOFTWARE	G A:1	BINDING SITE FOR RESIDUE BA A1100
08	AC8	SOFTWARE	HOH A:2002	BINDING SITE FOR RESIDUE BA A1101
09	AC9	SOFTWARE	U A:64 , U A:67	BINDING SITE FOR RESIDUE BA A1102
10	BC1	SOFTWARE	G A:50	BINDING SITE FOR RESIDUE BA A1103
11	BC2	SOFTWARE	G A:74 , HOH A:2003 , HOH A:2004 , HOH A:2005	BINDING SITE FOR RESIDUE BA A1104
12	BC3	SOFTWARE	C A:31 , G A:32	BINDING SITE FOR RESIDUE BA A1105
13	BC4	SOFTWARE	U A:4 , U A:5 , U A:88 , G A:89 , A A:90	BINDING SITE FOR RESIDUE NA A1106
14	BC5	SOFTWARE	U A:64 , C A:65	BINDING SITE FOR RESIDUE NA A1107
15	BC6	SOFTWARE	U A:81 , G A:82	BINDING SITE FOR RESIDUE K A1108

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:RNA  Length:94
                                                                                                                             
                  5fkh A  1 GGCUUAUCAAGAGAGGGUGAGCGACUGGCGCGAAGACCCCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG 94
                                    10        20        30        40        50        60        70        80        90

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Ligands, Modified Residues, Ions
		BA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		K	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

5fk1	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UG
5fk2	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GG
5fk3	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CC
5fk4	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UU
5fk5	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS AA
5fk6	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CA
5fkd	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UA
5fke	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS GU
5fkf	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS UC
5fkg	SAM-I RIBOSWITCH BEARING THE H. MARISMORTUI KT-7 VARIANT 3BN IS CG

Description