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(-) Description

Title :  CRYSTAL STRUCTURE OF D. MELANOGASTER PUR-ALPHA REPEAT III.
 
Authors :  A. Windhager, R. Janowski, D. Niessing
Date :  21 Dec 15  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Dna-Protein Interaction, Rna-Protein Interaction, Dna Unwinding, Fxtas, Als, Ftld, 5Q31. 3 Microdeletion Syndrome, Neurodegeneration, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Weber, H. Bao, C. Hartlmuller, Z. Wang, A. Windhager, R. Janowski, T. Madl, P. Jin, D. Niessing
Structural Basis Of Nucleic-Acid Recognition And Double-Strand Unwinding By The Essential Neuronal Protein Pur-Alpha.
Elife V. 5 2016
PubMed-ID: 26744780  |  Reference-DOI: 10.7554/ELIFE.11297

(-) Compounds

Molecule 1 - CG1507-PB, ISOFORM B
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PUR-ALPHA, CG1507, DMEL_CG1507
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Synonym: PURINE-RICH BINDING PROTEIN-ALPHA,ISOFORM F,PUR-ALPHA REPEAT III

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5FGO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FGO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FGO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FGO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FGO)

(-) Exons   (0, 0)

(no "Exon" information available for 5FGO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:62
                                                                                               
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..eeeeeeeee....eeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                5fgo A  194 PEERHmKVDNKNFYFDIGQNNRGVYmRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKmKK  255
                                 | 203       213|    | 223       233       243       253  
                                 |           214A    |                               253-MSE
                               199-MSE             219-MSE                                


Chain B from PDB  Type:PROTEIN  Length:65
                                                                                                  
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeeeeeeee..eeeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                5fgo B  191 GDLPEERHmKVDNKNFYFDIGQNNRGVYmRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKmKK  255
                                   200       210       220       230       240       250  |  
                                  199-MSE             219-MSE                           253-MSE


Chain C from PDB  Type:PROTEIN  Length:61
                                                                                              
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeeeeeee....eeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                5fgo C  194 PEERHmKVDNKNFYFDIGQNNRGVYmRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKmK  254
                                 | 203       213     | 223       233       243       253 
                               199-MSE             219-MSE                           253-MSE


Chain D from PDB  Type:PROTEIN  Length:66
                                                                                                   
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeee..eeeeeeeeee..eeeeeeeeee..eeeeeeee..hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                5fgo D  189 FKGDLPEERHmKVDNKNFYFDIGQNNRGVYmRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKmK  254
                                   198|      208       218|      228       238       248    | 
                                    199-MSE             219-MSE                           253-MSE


Chain E from PDB  Type:PROTEIN  Length:64
                                                                                                 
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeeeeeeee....eeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                5fgo E  192 DLPEERHmKVDNKNFYFDIGQNNRGVYmRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKmKK  255
                                   201       211       221       231       241       251 |  
                                 199-MSE             219-MSE                           253-MSE


Chain F from PDB  Type:PROTEIN  Length:63
                                                                                                
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeeeeeeee....eeeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                5fgo F  192 DLPEERHmKVDNKNFYFDIGQNNRGVYmRISEVKNNFRTSITIPEKCWIRFRDIFNDYCEKmK  254
                                   201       211       221       231       241       251 | 
                                 199-MSE             219-MSE                           253-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FGO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FGO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FGO)

(-) Gene Ontology  (9, 18)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q9V4D9_DROME | Q9V4D9: 3k44 5fgp
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(-) Related Entries Specified in the PDB File

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