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(-) Description

Title :  YELLOW FEVER VIRUS HELICASE
 
Authors :  J. L. Smith
Date :  18 Dec 15  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Dead Helicase Rna Triphosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wu, A. K. Bera, R. J. Kuhn, J. L. Smith
Structure Of The Flavivirus Helicase: Implications For Catalytic Activity, Protein Interactions, And Proteolytic Processing.
J. Virol. V. 79 10268 2005
PubMed-ID: 16051820

(-) Compounds

Molecule 1 - SERINE PROTEASE NS3
    Chains: A
    EC Number: 3.4.21.91
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 1671-2107
    Organism Common: YFV
    Organism Scientific: YELLOW FEVER VIRUS (STRAIN 17D VACCINE)
    Organism Taxid: 11090
    Strain: 17D VACCINE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric/Biological Unit (1, 13)
No.NameCountTypeFull Name
1MSE13Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5FFM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FFM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:449 -Pro A:450

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FFM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FFM)

(-) Exons   (0, 0)

(no "Exon" information available for 5FFM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:417
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.......hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhh....eee.........eeeeehhhhhhhhh.........eeeee.....hhhhhhhhhhhhhhhhh...eeeee.................eeeee............hhhhhh...eeee..hhhhhhhhhhhhhhh...eee.......eeee.............eeee..eeeeeeee....eeeeeeeee.hhhhhhhhhh..........eeeee...........hhhhhhhhhhh...hhhhh......hhhhhh.........hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....hhhhh..hhhhh.........eee.....eee......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ffm A 185 SHmLKKGmTTVLDFHPGTRRFLPQILAECARRRLRTLVLAPTRVVLSEmKEAFHGLDVKFHTQAFSAEVIDAmCHATLTYRmLEPTRVVNWEVIImDEAHFLDPASIAARGWAAHRARANESATILmTATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVmAASLRKAGKSVVVLNRKKPDFILATDIAEmGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASmLLDNmEVRGGmVAPLYGVEGTKTPVSPGEmRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRWCDERVSSDQSALSEFIKFAEG 621
                              |    194      |207       217       227       237       247      |262  |    272 |     282     | 292       302       312      |322       332       342       352       362       372   |   382       392|      414   |   424       434       444       454       464       474       484       494  |    504   |   514       524  |    534       544       554       564       574       584       594       604       614       
                              |    |      201|                            236-MSE           254|    |      274-MSE       288-MSE                        319-MSE                                                  376-MSE         392|          418-MSE                                                                        497-MSE|     |                527-MSE                                                                                          
                            187-MSE|       205                                               260    |                                                                                                                             405                                                                                              502-MSE |                                                                                                                 
                                 192-MSE                                                          265-MSE                                                                                                                                                                                                                                508-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0 ; only for superseded entry 1YMF: 1,2)

(no "SCOP Domain" information available for 5FFM, only for superseded entry 1YMF replaced by 5FFM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FFM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FFM)

(-) Gene Ontology  (61, 61)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:449 - Pro A:450   [ RasMol ]  
 

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  5ffm
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  POLG_YEFV1 | P03314
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_YEFV1 | P03314: 1na4 1yks 3eva 3evb 3evc 3evd 3eve 3evf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FFM)