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(-) Description

Title :  SACCHAROMYCES CEREVISIAE ACETOHYDROXYACID SYNTHASE IN COMPLEX WITH BENSULFURON METHYL
 
Authors :  L. W. Guddat, T. Lonhienne
Date :  17 Dec 15  (Deposition) - 16 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.17
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Herbicide, Sulfonylurea, Branched-Chain Amino Acid, Acetohydroxyacid Synthase, Thdp, Fad, Pyruvate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lonhienne, A. Nouwens, C. M. Williams, J. A. Fraser, Y. T. Lee, N. P. West, L. W. Guddat
Commercial Herbicides Can Trigger The Oxidative Inactivatio Of Acetohydroxyacid Synthase.
Angew. Chem. Int. Ed. Engl. V. 55 4247 2016
PubMed-ID: 26924714  |  Reference-DOI: 10.1002/ANIE.201511985

(-) Compounds

Molecule 1 - ACETOLACTATE SYNTHASE CATALYTIC SUBUNIT, MITOCHONDRIAL
    Atcc: 204508
    Chains: A, B
    EC Number: 2.2.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ILV2, SMR1, YMR108W, YM9718.07
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: ACETOHYDROXY-ACID SYNTHASE CATALYTIC SUBUNIT,ALS

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
160G2Ligand/IonMETHYL 2-[(4,6-DIMETHOXYPYRIMIDIN-2-YL)CARBAMOYLSULFAMOYLMETHYL]BENZOATE
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3MG4Ligand/IonMAGNESIUM ION
4TPP2Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:550 , ASN A:577 , GLU A:579 , TPP A:705 , HOH A:867binding site for residue MG A 701
02AC2SOFTWAREASP A:180 , ARG A:241 , GLY A:307 , ALA A:308 , GLY A:309 , ASN A:312 , THR A:334 , LEU A:335 , GLN A:336 , LEU A:352 , GLY A:353 , MET A:354 , HIS A:355 , GLY A:374 , ALA A:375 , ARG A:376 , ASP A:378 , ARG A:380 , VAL A:381 , GLU A:407 , VAL A:408 , ASN A:412 , GLY A:425 , ASP A:426 , ALA A:427 , GLN A:501 , MET A:502 , GLY A:520 , GLY A:521 , 60G A:703 , HOH A:826 , HOH A:855 , HOH A:937 , HOH A:939 , HOH A:1036 , PHE B:201binding site for residue FAD A 702
03AC3SOFTWAREMET A:354 , ASP A:379 , ARG A:380 , MET A:582 , TRP A:586 , FAD A:702 , HOH A:864 , GLY B:116 , ALA B:117 , VAL B:191 , PRO B:192 , PHE B:201 , GLN B:202 , LYS B:251binding site for residue 60G A 703
04AC4SOFTWAREGLN A:343 , ASP A:350 , GLN A:506 , TRP A:508 , HOH A:845 , HOH A:1091binding site for residue MG A 704
05AC5SOFTWAREVAL A:497 , GLY A:498 , GLN A:499 , HIS A:500 , GLY A:523 , MET A:525 , GLY A:549 , ASP A:550 , ALA A:551 , SER A:552 , ASN A:577 , GLU A:579 , GLN A:580 , GLY A:581 , MET A:582 , VAL A:583 , MG A:701 , HOH A:867 , TYR B:113 , PRO B:114 , GLY B:115 , GLU B:139 , PRO B:165 , ASN B:169 , GLN B:202binding site for residue TPP A 705
06AC6SOFTWAREPHE A:201 , ASP B:180 , ARG B:241 , GLY B:307 , ALA B:308 , GLY B:309 , ASN B:312 , THR B:334 , LEU B:335 , GLN B:336 , MET B:351 , LEU B:352 , GLY B:353 , MET B:354 , HIS B:355 , GLY B:374 , ALA B:375 , ARG B:376 , ASP B:378 , ARG B:380 , VAL B:381 , GLU B:407 , VAL B:408 , ASN B:412 , GLY B:425 , ASP B:426 , ALA B:427 , GLN B:501 , MET B:502 , GLY B:520 , GLY B:521 , 60G B:703 , HOH B:805 , HOH B:835 , HOH B:845 , HOH B:864 , HOH B:882 , HOH B:953binding site for residue FAD B 701
07AC7SOFTWAREASP B:550 , ASN B:577 , GLU B:579 , TPP B:705 , HOH B:873binding site for residue MG B 702
08AC8SOFTWAREGLY A:116 , VAL A:191 , PRO A:192 , PHE A:201 , GLN A:202 , LYS A:251 , MET B:354 , ARG B:380 , MET B:582 , TRP B:586 , FAD B:701binding site for residue 60G B 703
09AC9SOFTWAREGLN B:343 , ASP B:350 , GLN B:506 , TRP B:508 , HOH B:822 , HOH B:1008binding site for residue MG B 704
10AD1SOFTWARETYR A:113 , PRO A:114 , GLY A:115 , GLU A:139 , PRO A:165 , ASN A:169 , GLN A:202 , VAL B:497 , GLY B:498 , GLN B:499 , HIS B:500 , GLY B:523 , MET B:525 , GLY B:549 , ASP B:550 , ALA B:551 , SER B:552 , ASN B:577 , GLU B:579 , GLN B:580 , GLY B:581 , MET B:582 , VAL B:583 , MG B:702 , HOH B:873binding site for residue TPP B 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FEM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:652 -Pro A:653
2Leu B:652 -Pro B:653

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FEM)

(-) Exons   (0, 0)

(no "Exon" information available for 5FEM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhhhhhhhhhh...eeeee.hhhhhhhhhhh......eee...hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee..............hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh....eeeeeeehhhhhh.....eehhhhh...hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.hhhhhhhhhhhhhh..eee.hhhh.........eeee.....hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhh.......eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhhh...eeeeee...hhhhhhhhhhhh............hhhhhhhhh..eeeee.hhhhhhhhhhhhhhh...eeeeee.......................hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fem A  83 PDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFINFDPEVERQQTELRHKRTGGKH 687
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678         
                                                                                                                                                                                                                     270|                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                      277                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhhhhhhhhhh...eeeee.hhhhhhhhhhh......eee...hhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhh..eeeeeee..............hhhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhh....eeeeeeehhhhhh.....ee.hhh....hhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhh.hhhhhhhhhhhhhh..eee.hhhh.........eeee.....hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhh.......eeee.hhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh....eeeee..hhhhhhhhhhh.......ee.........hhhhhhhhhhhhh...eeeeeeehhhhhhhh.hhhhhhhhh...eeeeee...hhhhhhhhhhhh............hhhhhhhhh..eeeee.hhhhhhhhhhhhhhh...eeeeee.......................hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fem B  83 PDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFINFDPEVERQQTELRHKRTGGKH 687
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678         
                                                                                                                                                                                                                     270|                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                      277
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FEM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FEM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FEM)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

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        ILVB_YEAST | P07342: 1jsc 1n0h 1t9a 1t9b 1t9c 1t9d 5ims 5inu 5inv

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