5FCD - JenaLib

Title :   CRYSTAL STRUCTURE OF MCCD PROTEIN

Authors :   B. Nocek, R. Jedrzejczak, W. F. Anderson, K. Severinov, S. Dubiley, A. Joachimiak, Center For Structural Genomics Of Infectious D (Csgid)

Date :   15 Dec 15 (Deposition) - 30 Dec 15 (Release) - 08 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,D,E
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,E  (1x)
Biol. Unit 3: A,B,D,E  (3x)

Keywords :   Mccd Protein, Methyltransferase Fold, Sam Binding, Mcc Binding, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Nocek, R. Jedrzejczak, W. F. Anderson, K. Severinov, S. Dubiley, A. Joachimiak
Crystal Structure Of Mccd Protein.
To Be Published
PubMed: search

Compounds

Molecule 1 - UNK-UNK-UNK-MSE-UNK
	Chains	:	D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
	Expression System Taxid	:	866768
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	THE N-TERMINAL PART OF MCCD PROTEIN

Molecule 2 - UNK-UNK-UNK-UNK-MSE-UNK
	Chains	:	E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
	Expression System Taxid	:	866768
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Other Details	:	THE N-TERMINAL PART OF MCCD PROTEIN

Molecule 3 - MCCD
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
	Expression System Taxid	:	866768
	Gene	:	MCCD
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	MCCD PROTEIN

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	D	E
Biological Unit 1 (1x)	:	A		D
Biological Unit 2 (1x)	:		B		E
Biological Unit 3 (3x)	:	A	B	D	E

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 20)

Asymmetric Unit (3, 20)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	UNK	9	Mod. Amino Acid

Biological Unit 1 (1, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	UNK	-1	Mod. Amino Acid

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	UNK	-1	Mod. Amino Acid

Biological Unit 3 (1, 30)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	30	Mod. Amino Acid	SELENOMETHIONINE
3	UNK	-1	Mod. Amino Acid

Sites (1, 1)

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:133 , ARG A:134 , LEU A:135 , ILE A:136 , ASN B:133 , LEU B:135	binding site for residue CL A 301

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeeehhhhh..hhhhhhhhhhhheeeeeeeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhh.eeeeeeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fcd A  29 DNTPPGAEYTIDYWIKHGCINKKSHLLDLACSTGFSSRECFKKEGASAEGIDISESAVmVANEKAKKLKANNLLKYYVADACDLPFEDNTFTHVLGGCNFAFIQNRLIALNETHRCLNHmGSmCISNFYYRRKISDKLINDVYNAINFRPNPLWTLEYWHQFFSERFTLVSEENHEmESQSEDELKADIYDYIFNRQNVFFERFLKIRRPLNIQRDYQGVTLQIWRKK 267
                                    38        48        58        68        78        88        98       108       118       128       138       148  |    158       168       178       188       198      |208       218     ||239       249       259        
                                                                                     87-MSE                                                      148-MSE                                                  205-MSE            224|                               
                                                                                                                                                    151-MSE                                                                   236

Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh.....eeeee............eeeeeeehhhhh..hhhhhhhhhhhheeeeeeeeeeeeee....hhhhhhhhhhhhh.......hhhhhhhhhhh.eeeeeeeeee....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fcd B  30 NTPPGAEYTIDYWIKHGCINKKSHLLDLACSTGFSSRECFKKEGASAEGIDISESAVmVANEKAKKLKANNLLKYYVADACDLPFEDNTFTHVLGGCNFAFIQNRLIALNETHRCLNHmGSmCISNFYYRRKISDKLINDVYNAINFRPNPLWTLEYWHQFFSERFTLVSEENHEmESQSEDELKADIYDYIFNRNQNVFFERFLKIRRPLNIQRDYQGVTLQIWRKK 267
                                    39        49        59        69        79       |89        99       109       119       129       139       149 |     159       169       179       189       199     | 209       219     ||239       249       259        
                                                                                    87-MSE                                                      148-MSE                                                  205-MSE             225|                               
                                                                                                                                                   151-MSE                                                                    236

Chain D from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 5fcd D  -1 xxxmx   3
                            |||||
                           -1-UNK
                             0-UNK
                              1-UNK
                               2-MSE
                                3-UNK

Chain E from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5fcd E  -3 xxxxmx   2
                            ||||||
                            ||||||
                           -3-UNK|
                            -2-UNK
                             -1-UNK
                               0-UNK
                                1-MSE
                                 2-UNK

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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