5FC9 - JenaLib

Title :   NOVEL PURPLE CUPREDOXIN FROM NITROSOPUMILUS MARITIMUS

Authors :   P. Hosseinzadeh, Y. Lu, H. Robinson, Y. -G. Gao

Date :   15 Dec 15 (Deposition) - 11 May 16 (Release) - 08 Jun 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Cupredoxin, No Oxidation, Nitrogen Cycle, Open Type 1 Copper Site, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Hosseinzadeh, S. Tian, N. M. Marshall, J. Hemp, T. Mullen, M. J. Nilges, Y. G. Gao, H. Robinson, D. A. Stahl, R. B. Gennis, Y. Lu
A Purple Cupredoxin From Nitrosopumilus Maritimus Containin A Mononuclear Type 1 Copper Center With An Open Binding Site.
J. Am. Chem. Soc. V. 138 6324 2016
PubMed-ID: 27120678 | Reference-DOI: 10.1021/JACS.5B13128

Compounds

Molecule 1 - BLUE (TYPE 1) COPPER DOMAIN PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	ROSETTA
	Expression System Taxid	:	562
	Gene	:	NMAR_1307
	Organism Scientific	:	NITROSOPUMILUS MARITIMUS (STRAIN SCM1)
	Organism Taxid	:	436308
	Other Details	:	PROTEIN CONTAINING CU IONS
	Strain	:	SCM1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:1043 , CYS A:1083 , HIS A:1086 , HOH A:1508	binding site for residue CU A 1401
2	AC2	SOFTWARE	HIS B:2043 , CYS B:2083 , HIS B:2086 , HOH B:2514	binding site for residue CU B 2401
3	AC3	SOFTWARE	HIS B:2071 , HOH B:2559 , HOH B:2560 , GLU C:3075 , HOH C:3593	binding site for residue CU B 2402
4	AC4	SOFTWARE	HIS C:3043 , CYS C:3083 , HIS C:3086 , HOH C:3507	binding site for residue CU C 3401
5	AC5	SOFTWARE	HIS D:4043 , CYS D:4083 , HIS D:4086 , HOH D:4504	binding site for residue CU D 4401

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee................eeee...eeeeeee........eee.....eeeeee........eeeeee...eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5fc9 A 1002 DAQIIIPNGNYDVTGAGFYSPLNLEIPVGTTVTWTNDDSVPHNIQSIDVNGKVIQLFNSPPLNTGDRFEHVFEEEGVYKYYCSFHPWRVGLVTVS 1096
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091

Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee................eeeee..eeeeeee........eee.....eeeeee........eeeeee...eeeeee........eeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5fc9 B 2002 DAQIIIPNGNYDVTGAGFYSPLNLEIPVGTTVTWTNDDSVPHNIQSIDVNGKVIQLFNSPPLNTGDRFEHVFEEEGVYKYYCSFHPWRVGLVTVS 2096
                                  2011      2021      2031      2041      2051      2061      2071      2081      2091

Chain C from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee................eeeee..eeeeeee........eee.....eeeeee........eeeeee...eeeeee.......eeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5fc9 C 3002 DAQIIIPNGNYDVTGAGFYSPLNLEIPVGTTVTWTNDDSVPHNIQSIDVNGKVIQLFNSPPLNTGDRFEHVFEEEGVYKYYCSFHPWRVGLVTVS 3096
                                  3011      3021      3031      3041      3051      3061      3071      3081      3091

Chain D from PDB  Type:PROTEIN  Length:95
                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee................eeeee..eeeeeee........eee.....eeeeee........eeeeee...eeeeee........eeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                5fc9 D 4002 DAQIIIPNGNYDVTGAGFYSPLNLEIPVGTTVTWTNDDSVPHNIQSIDVNGKVIQLFNSPPLNTGDRFEHVFEEEGVYKYYCSFHPWRVGLVTVS 4096
                                  4011      4021      4031      4041      4051      4061      4071      4081      4091

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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	Cis Peptide Bonds
		Ser A:1021 - Pro A:1022	[ RasMol ]
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		Ser C:3021 - Pro C:3022	[ RasMol ]
		Ser D:4021 - Pro D:4022	[ RasMol ]

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