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(-) Description

Title :  COMPLEMENT FACTOR D IN COMPLEX WITH COMPOUND2
 
Authors :  N. Ostermann, F. Zink
Date :  14 Dec 15  (Deposition) - 26 Oct 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Maibaum, S. M. Liao, A. Vulpetti, N. Ostermann, S. Randl, S. Rudisser, E. Lorthiois, P. Erbel, B. Kinzel, F. A. Kolb, S. Barbieri J. Wagner, C. Durand, K. Fettis, S. Dussauge, N. Hughes, O. Delgado, U. Hommel, T. Gould, A. Mac Sweeney, B. Gerhartz, F. Cumin, S. Flohr, A. Schubart, B. Jaffee, R. Harrison, A. M. Risitano, J. Eder, K. Anderson
Small-Molecule Factor D Inhibitors Targeting The Alternativ Complement Pathway.
Nat. Chem. Biol. V. 12 1105 2016
PubMed-ID: 27775713  |  Reference-DOI: 10.1038/NCHEMBIO.2208

(-) Compounds

Molecule 1 - COMPLEMENT FACTOR D
    Chains: A
    EC Number: 3.4.21.46
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 26-253
    Gene: CFD, DF, PFD
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ADIPSIN,C3 CONVERTASE ACTIVATOR,PROPERDIN FACTOR D

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15W51Ligand/IonMETHYL 2-[[[(2~{S})-2-[[3-(TRIFLUOROMETHYLOXY)PHENYL]CARBAMOYL]PYRROLIDIN-1-YL]CARBONYLAMINO]METHYL]BENZOATE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:129A , VAL A:130 , VAL A:162 , LEU A:163 , ASP A:164 , ARG A:165 , MET A:181 , CYS A:182 , HOH A:465binding site for residue GOL A 301
2AC2SOFTWAREHIS A:40 , LEU A:41 , CYS A:42 , HIS A:57 , CYS A:58 , TRP A:141 , GLY A:142 , ILE A:143 , ARG A:151 , SER A:190 , CYS A:191 , LYS A:192 , GLY A:193 , SER A:195 , VAL A:213 , SER A:215 , ARG A:218 , CYS A:220 , HOH A:452binding site for residue 5W5 A 302

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:136 -A:201
3A:168 -A:182
4A:191 -A:220

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FBE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FBE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FBE)

(-) Exons   (0, 0)

(no "Exon" information available for 5FBE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeeeee..eeeehhhhhh......eeeee............eeeeeeeeee.............eeeee..........................eeeeee..............eeeeeeeehhhhhh............eeee..............eeee..eeeeee.............eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5fbe A   16 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  243
                                    25        35||      46        56     |||63        73        83        93       103       113 ||   124A     | 133       143   ||  154       164      |172       182       192       202|      216       225       235        
                                               36|                     61A||                                                   115|   124A  129A               147|                  170A|                             202|             223A                    
                                                38                      61B|                                                    118                             149                   170B                              207                                     
                                                                         61C
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FBE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FBE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FBE)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  5fbe
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CFAD_HUMAN | P00746: 1bio 1dfp 1dic 1dst 1dsu 1fdp 1hfd 2xw9 2xwa 2xwb 4cbn 4cbo 4d9r 5fbi 5fck 5mt0 5mt4 5nar 5naw 5nb6 5nb7 5nba 5tca 5tcc

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FBE)