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(-) Description

Title :  CRYSTAL STRUCTURE OF DIHYDRONEOPTERIN ALDOLASE FROM BACILLUS ANTHRACIS COMPLEX WITH 9-METHYLGUANINE
 
Authors :  C. Chang, N. Maltseva, Y. Kim, S. Shatsman, W. F. Anderson, A. Joachimia For Structural Genomics Of Infectious Diseases (Csgid)
Date :  11 Dec 15  (Deposition) - 13 Jan 16  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Structural Genomics, Csgid, Center For Structural Genomics Of Infectious Diseases, Dihydroneopterin Aldolase, Bacillus Anthracis, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, N. Maltseva, Y. Kim, S. Shatsman, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Dihydroneopterin Aldolase From Bacillu Anthracis Complex With 9-Methylguanine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 7,8-DIHYDRONEOPTERIN ALDOLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 4.1.2.25
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG28
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Gene: IE3_00005
    Organism Scientific: BACILLUS CEREUS BAG3X2-1
    Organism Taxid: 1053183

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 23)

Asymmetric Unit (2, 23)
No.NameCountTypeFull Name
19MG8Ligand/Ion9-METHYLGUANINE
2MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
19MG4Ligand/Ion9-METHYLGUANINE
2MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
19MG4Ligand/Ion9-METHYLGUANINE
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:47 , VAL A:51 , ASN A:52 , TYR A:53 , VAL D:17 , GLU D:21 , LYS D:70 , LEU D:71 , GLU D:73 , LYS D:99binding site for residue 9MG A 201
2AC2SOFTWAREVAL A:17 , LEU A:71 , VAL A:72 , GLU A:73 , HOH A:301 , LEU B:47 , SER B:50 , VAL B:51 , ASN B:52 , TYR B:53binding site for residue 9MG B 201
3AC3SOFTWARELEU B:71 , VAL B:72 , GLU B:73 , ILE C:4 , LEU C:47 , VAL C:51 , ASN C:52 , TYR C:53binding site for residue 9MG C 201
4AC4SOFTWAREVAL C:17 , LEU C:71 , VAL C:72 , GLU C:73 , HOH C:305 , LEU D:47 , VAL D:51 , ASN D:52 , TYR D:53binding site for residue 9MG C 202
5AC5SOFTWARELEU E:47 , VAL E:51 , ASN E:52 , TYR E:53 , VAL H:17 , LEU H:71 , VAL H:72 , GLU H:73 , HOH H:301 , HOH H:303binding site for residue 9MG E 201
6AC6SOFTWAREVAL E:17 , LEU E:71 , VAL E:72 , GLU E:73 , HOH E:301 , LEU F:47 , VAL F:51 , ASN F:52 , TYR F:53 , HOH F:304binding site for residue 9MG F 201
7AC7SOFTWARELEU F:71 , VAL F:72 , GLU F:73 , HOH F:303 , HOH F:316 , ILE G:4 , LEU G:47 , SER G:50 , VAL G:51 , ASN G:52 , TYR G:53binding site for residue 9MG G 201
8AC8SOFTWARELEU G:71 , VAL G:72 , GLU G:73 , LYS G:99 , HOH G:311 , VAL H:51 , TYR H:53binding site for residue 9MG H 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FAR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FAR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FAR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FAR)

(-) Exons   (0, 0)

(no "Exon" information available for 5FAR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee....hhhhhhhheeeeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 5far A   2 DKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRER 119
                                   |11        21        31        41        51        61        71        81        91       101       111        
                                   9-MSE                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee....hhhhhhhheeeeeeeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 5far B   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRER 119
                            |       10        20        30        40        50        60        70        80        90       100       110         
                            1-MSE   9-MSE                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee....hhhhhhhheeeeeeeeeee.hhhhhhh.hhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5far C   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRERP 120
                            |       10        20        30        40        50        60        70        80        90       100       110       120
                            1-MSE   9-MSE                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee....hhhhhhhheeeeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5far D   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRERP 120
                            |       10        20        30        40        50        60        70        80        90       100       110       120
                            1-MSE   9-MSE                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee....hhhhhhhheeeeeeeeee..hhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 5far E   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRER 119
                            |       10        20        30        40        50        60        70        80        90       100       110         
                            1-MSE   9-MSE                                                                                                          


Chain F from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee....hhhhhhhheeeeeeeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5far F   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRERP 120
                            |       10        20        30        40        50        60        70        80        90       100       110       120
                            1-MSE   9-MSE                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee....hhhhhhhheeeeeeeeeee.hhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5far G   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRERP 120
                            |       10        20        30        40        50        60        70        80        90       100       110       120
                            1-MSE   9-MSE                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee....hhhhhhhheeeeeeeeee..hhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 5far H   1 mDKIYIHDmEFYGYHGVFPEENKLGQRFKVDLTVELDLKRAGESDDLEHSVNYGELFELCRKVVEDRTYKLVESIAENIATDILKQYESISRCTIKVIKPDPPIPGHYRAVAVEITRERP 120
                            |       10        20        30        40        50        60        70        80        90       100       110       120
                            1-MSE   9-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

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(-) Gene Ontology  (5, 5)

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