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(-) Description

Title :  CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING VH1-46 GERMLINE-DERIVED CD4-BINDING SITE-DIRECTED ANTIBODY CH235 IN COMPLEX WITH HIV-1 CLADE A/E 93TH057 GP120
 
Authors :  L. Chen, T. Zhou, P. D. Kwong
Date :  10 Dec 15  (Deposition) - 09 Mar 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.89
Chains :  Asym. Unit :  A,B,C,G,H,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  G,H,L  (1x)
Keywords :  Hiv-1, Vh1-46 Germline, Neutralizing Antibody, Ch235, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Bonsignori, T. Zhou, Z. Sheng, L. Chen, F. Gao, M. G. Joyce, G. Ozorowski, G. Y. Chuang, C. A. Schramm, K. Wiehe, S. M. Alam, T. Bradley, M. A. Gladden, K. K. Hwang, S. Iyengar, A. Kumar, X. Lu, K. Luo, M. C. Mangiapani, R. J. Parks, H. Song, P. Acharya, R. T. Bailer, A. Cao, A. Druz, I. S. Georgiev, Y. D. Kwon, M. K. Louder, B. Zhang, A. Zheng, B. J. Hill, R. Kong, C. Soto, J. C. Mullikin, D. C. Douek, D. C. Montefiori, M. A. Moody, G. M. Shaw, B. H. Hahn, G. Kelsoe, P. T. Hraber, B. T. Korber, S. D. Boyd, A. Z. Fire, T. B. Kepler, L. Shapiro, A. B. Ward, J. R. Mascola, H. X. Liao, P. D. Kwong, B. F. Hayne
Maturation Pathway From Germline To Broad Hiv-1 Neutralizer Of A Cd4-Mimic Antibody.
Cell V. 165 449 2016
PubMed-ID: 26949186  |  Reference-DOI: 10.1016/J.CELL.2016.02.022

(-) Compounds

Molecule 1 - CLADE A/E 93TH057 HIV-1 GP120 CORE
    Chains: A, G
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Gene: HIV-1 ENV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676
 
Molecule 2 - HEAVY CHAIN OF CH235-LINEAGE ANTIBODY CH235
    Chains: B, H
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - LIGHT CHAIN OF CH235-LINEAGE ANTIBODY CH235
    Chains: C, L
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCGHL
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    GHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Asymmetric Unit (2, 30)
No.NameCountTypeFull Name
1NAG27Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1NAG14Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
1NAG13Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR B:27 , THR B:28 , ASN B:31 , TYR B:32binding site for residue PO4 B 301
02AC2SOFTWARETHR H:28 , ASN H:31 , TYR H:32binding site for residue PO4 H 301
03AC3SOFTWAREGLU A:87 , ASN A:88 , ASP G:57binding site for Mono-Saccharide NAG A 501 bound to ASN A 88
04AC4SOFTWAREASN A:234 , THR A:236 , SER A:274 , GLU A:275 , ASN A:276 , HOH A:601binding site for Mono-Saccharide NAG A 502 bound to ASN A 234
05AC5SOFTWAREHIS A:85 , ASN A:229 , LYS A:231 , ASN A:241binding site for Mono-Saccharide NAG A 503 bound to ASN A 241
06AC6SOFTWARELYS A:252 , ASN A:262 , ARG A:379 , CYS A:445 , VAL A:446 , SER A:447 , NAG A:513binding site for Mono-Saccharide NAG A 504 bound to ASN A 262
07AC7SOFTWAREASN A:276 , HIS A:352 , PHE A:353 , HOH A:601binding site for Mono-Saccharide NAG A 505 bound to ASN A 276
08AC8SOFTWAREGLU A:268 , GLU A:269 , ILE A:270 , ASN A:289binding site for Mono-Saccharide NAG A 506 bound to ASN A 289
09AC9SOFTWAREASN A:295 , THR A:297 , TYR A:330 , GLU A:332 , LYS A:442 , SER L:182 , ASP L:185binding site for Mono-Saccharide NAG A 507 bound to ASN A 295
10AD1SOFTWAREASN A:334 , LYS A:337binding site for Mono-Saccharide NAG A 508 bound to ASN A 334
11AD2SOFTWAREASN A:355 , ARG C:108 , THR C:109binding site for Mono-Saccharide NAG A 509 bound to ASN A 355
12AD3SOFTWAREMET A:373 , ASN A:386 , THR A:388binding site for Mono-Saccharide NAG A 510 bound to ASN A 386
13AD4SOFTWAREGLN A:389 , ASN A:392 , THR A:394 , CYS A:410binding site for Mono-Saccharide NAG A 511 bound to ASN A 392
14AD5SOFTWAREMET A:407 , ASN A:411binding site for Mono-Saccharide NAG A 512 bound to ASN A 411
15AD6SOFTWAREASN A:262 , ASN A:448 , NAG A:504binding site for Mono-Saccharide NAG A 513 bound to ASN A 448
16AD7SOFTWAREASN A:461 , THR A:463 , SER B:132 , THR B:135 , SER C:114binding site for Mono-Saccharide NAG A 514 bound to ASN A 461
17AD8SOFTWAREASN G:234 , THR G:236 , SER G:274 , ASN G:276binding site for Mono-Saccharide NAG G 501 bound to ASN G 234
18AD9SOFTWAREHIS G:85 , ASN G:229 , LYS G:231 , ASN G:241binding site for Mono-Saccharide NAG G 502 bound to ASN G 241
19AE1SOFTWARELYS G:252 , ASN G:262 , ARG G:379 , CYS G:445 , VAL G:446 , SER G:447 , NAG G:512binding site for Mono-Saccharide NAG G 503 bound to ASN G 262
20AE2SOFTWAREASN G:276 , HIS G:352 , PHE G:353 , HOH G:605 , ARG L:30binding site for Mono-Saccharide NAG G 504 bound to ASN G 276
21AE3SOFTWAREGLU G:268 , GLU G:269 , ILE G:270 , ASN G:289binding site for Mono-Saccharide NAG G 505 bound to ASN G 289
22AE4SOFTWAREASP C:185 , ASN G:295 , THR G:297 , TYR G:330 , GLU G:332 , LYS G:442binding site for Mono-Saccharide NAG G 506 bound to ASN G 295
23AE5SOFTWAREASN G:334 , LYS G:337binding site for Mono-Saccharide NAG G 507 bound to ASN G 334
24AE6SOFTWAREASN G:355binding site for Mono-Saccharide NAG G 508 bound to ASN G 355
25AE7SOFTWAREMET G:373 , ASN G:386 , THR G:388binding site for Mono-Saccharide NAG G 509 bound to ASN G 386
26AE8SOFTWAREGLN G:389 , ASN G:392 , THR G:394 , CYS G:410binding site for Mono-Saccharide NAG G 510 bound to ASN G 392
27AE9SOFTWARELYS G:408 , GLY G:409 , ASN G:411binding site for Mono-Saccharide NAG G 511 bound to ASN G 411
28AF1SOFTWAREASN G:262 , ASN G:448 , NAG G:503binding site for Mono-Saccharide NAG G 512 bound to ASN G 448
29AF2SOFTWAREASN G:461 , THR G:463binding site for Mono-Saccharide NAG G 513 bound to ASN G 461
30AF3SOFTWAREGLU A:64 , HIS A:66 , SER A:209 , ASP A:211 , ARG A:327 , ASN A:377 , ARG A:379 , GLY A:380 , LYS A:419 , LYS H:209 , VAL H:211 , GLU H:212binding site for Di-peptide PO4 A 515 and ARG H 210

(-) SS Bonds  (22, 22)

Asymmetric Unit
No.Residues
1A:54 -A:74
2A:218 -A:247
3A:228 -A:239
4A:296 -A:331
5A:378 -A:445
6A:385 -A:418
7A:395 -A:410
8B:140 -B:196
9C:23 -C:88
10C:134 -C:194
11G:54 -G:74
12G:119 -G:205
13G:218 -G:247
14G:228 -G:239
15G:296 -G:331
16G:378 -G:445
17G:385 -G:418
18G:395 -G:410
19H:22 -H:92
20H:140 -H:196
21L:23 -L:88
22L:134 -L:194

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Gln A:428 -Gly A:429
2Trp B:54 -Gly B:55
3Phe B:146 -Pro B:147
4Glu B:148 -Pro B:149
5Ser C:7 -Pro C:8
6Tyr C:140 -Pro C:141
7Phe H:146 -Pro H:147
8Glu H:148 -Pro H:149
9Ser L:7 -Pro L:8
10Tyr L:140 -Pro L:141

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F9W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F9W)

(-) Exons   (0, 0)

(no "Exon" information available for 5F9W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhhhhhhee......eee.....eeee.hhhhhhhhhhhhhhhhhhhhh...eeee..eeee.............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee.......eeeeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee......hhhhh.......eeeeeeee..eee......eee........eeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5f9w A   45 WKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQI  491
                                    54        64        74        84        94       104       114       124|      207       217       227       237       247       257       267       277       287       297   ||  329       339       349     ||360       370       380       390      |409       419       429       439       449       459       469       479       489  
                                                                                                         124|                                                                                                    301|                            355|                                     397|                                                                                    
                                                                                                          198                                                                                                     324                             357                                      407                                                                                    


Chain B from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeee....eeeeeee...eeeee........eeeee.......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5f9w B    1 QVQLVQSGAEVKKPGASVTVSCQASGYTFTNYYVHWVRQAPGQGLQLMGWIDPSWGRTNYAQNFQGRITMTRDTSTSTVYMEMRSLRSEDTAVYYCARNVATEGSLLHYDYWGQGTLVTVSAASTKGPSVFPLAPSSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||101       111       121      |134       144       154       164       174       184       194       204       214
                                                                              52A                            82A||               100A||||                         128|                                                                                  
                                                                                                              82B|                100B|||                          132                                                                                  
                                                                                                               82C                 100C||                                                                                                               
                                                                                                                                    100D|                                                                                                               
                                                                                                                                     100E                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeee....eeeeee...hhhhh.eeeeee.....ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee........eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5f9w C    1 EIVLTQSPATLSVSPGERATLSCRASQSVRSNLAWYQQRPGQAPRLLIYGTSTRATGVPARFSGRGSGTEFTLAISSMQSEDFAVYLCLQYNNWWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR  211
                                    10        20        30        40        50        60        70        80        90   ||  101       111       121       131       141       151       161       171       181       191       201       211
                                                                                                                        94|                                                                                                                   
                                                                                                                         96                                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.....eeee.......hhhhhhhhhheee.......ee.....eeee...hhhhhhhhhhhhhhhhhhh...eeee..eeee.............eee....eeeeee.......eeee..eeee.............eee.........eee..........eeeeeeeeeeeeeee........eeeeeeehhhhhhhhhhhhhhhhhhh...eeee......hhhhhheeeee..eeeee......hhhhh.......eeeeeeee..eee......eee........eeeeeeeeeeeeee........eeeeee....hhhhhhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5f9w G   45 WKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQI  491
                                    54        64        74        84        94       104       114       124|      207       217       227       237       247       257       267       277       287       297    || 328       338       348      |359       369       379       389       408       418       428       438       448       458       468       478       488   
                                                                                                         124|                                                                                                     302|                            355|                                     397|                                                                                    
                                                                                                          198                                                                                                      324                             357                                      407                                                                                    


Chain H from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeee....eeeeee...hhhhheeeeeeeeee....eeeeeee...eeeee........eeeee......eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5f9w H    1 QVQLVQSGAEVKKPGASVTVSCQASGYTFTNYYVHWVRQAPGQGLQLMGWIDPSWGRTNYAQNFQGRITMTRDTSTSTVYMEMRSLRSEDTAVYYCARNVATEGSLLHYDYWGQGTLVTVSAASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||101       111       121      |135       145       155       165       175       185       195       205         
                                                                              52A                            82A||               100A||||                         128|                                                                                 
                                                                                                              82B|                100B|||                          133                                                                                 
                                                                                                               82C                 100C||                                                                                                              
                                                                                                                                    100D|                                                                                                              
                                                                                                                                     100E                                                                                                              


Chain L from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeee....eeeeee...hhhhh.eeeeee.....ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee........eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5f9w L    1 EIVLTQSPATLSVSPGERATLSCRASQSVRSNLAWYQQRPGQAPRLLIYGTSTRATGVPARFSGRGSGTEFTLAISSMQSEDFAVYLCLQYNNWWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR  211
                                    10        20        30        40        50        60        70        80        90   ||  101       111       121       131       141       151       161       171       181       191       201       211
                                                                                                                        94|                                                                                                                   
                                                                                                                         96
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F9W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F9W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F9W)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5F9W)

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  Cis Peptide Bonds
    Gln A:428 - Gly A:429   [ RasMol ]  
    Glu B:148 - Pro B:149   [ RasMol ]  
    Glu H:148 - Pro H:149   [ RasMol ]  
    Phe B:146 - Pro B:147   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Ser C:7 - Pro C:8   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Trp B:54 - Gly B:55   [ RasMol ]  
    Tyr C:140 - Pro C:141   [ RasMol ]  
    Tyr L:140 - Pro L:141   [ RasMol ]  
 
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  5f9w
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  A0A0M3KKW9_9 | A0A0M3KKW9
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  A0A0M3KKW9_9 | A0A0M3KKW9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0M3KKW9_9 | A0A0M3KKW9: 4s1q 4s1r 4s1s 4ybl 4yc2 5cd5 5f96 5f9o 5fcu 5kjr 5te6 5u6e

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5F9W)