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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-(ACYL CARRIER PROTEIN) DEHYDRATASE FROM YERSINIA PESTIS WITH 5-BENZOYLPENTANOIC ACID
 
Authors :  N. Maltseva, Y. Kim, R. Zhang, K. Kwon, W. F. Anderson, A. Joachimiak, Ce Structural Genomics Of Infectious Diseases (Csgid)
Date :  06 Dec 15  (Deposition) - 23 Dec 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.18
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lyase, Alpha-Beta Fold, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Maltseva, Y. Kim, R. Zhang, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Co-Crystal Structure Of 3-Hydroxydecanoyl-(Acyl Carrier Protein) Dehydratase From Yersinia Pestis With 5-Benzoylpentanoic Acid
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 3-HYDROXYDECANOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE
    Chains: A, B
    EC Number: 4.2.1.59
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: FABA, AK38_1122
    Organism Scientific: YERSINIA PESTIS CO92
    Organism Taxid: 214092
    Synonym: 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABA,BETA- HYDROXYDECANOYL THIOESTER DEHYDRASE,TRANS-2-DECENOYL-[ACYL-CARRIER- PROTEIN] ISOMERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
15VO2Ligand/Ion6-OXIDANYLIDENE-6-PHENYL-HEXANOIC ACID
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:71 , PRO A:79 , GLY A:80 , PHE A:114 , THR A:115 , GLY A:116 , GLN A:117 , HOH A:302 , ARG B:105 , ALA B:106 , LEU B:107 , HOH B:304binding site for residue 5VO A 201
2AC2SOFTWARETHR A:9 , GLU A:11 , ARG A:137 , LYS A:138 , HOH A:350 , HOH A:392 , HOH A:424 , HOH A:450 , HIS B:50binding site for residue PO4 A 202
3AC3SOFTWAREARG A:105 , ALA A:106 , LEU A:107 , HOH A:307 , HIS B:71 , PRO B:79 , GLY B:80 , PHE B:114 , GLY B:116 , GLN B:117 , HOH B:381binding site for residue 5VO B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F6R)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1His A:71 -Phe A:72
2His B:71 -Phe B:72

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F6R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F6R)

(-) Exons   (0, 0)

(no "Exon" information available for 5F6R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhh............hhhhh...eeeeee.........eeeeeee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeeee.eeee.........eeeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f6r A  -2 SNAMVDKRESYTKEDLEASGRGELFGAGGPPLPAGNMLMMDRIVKMIEDGGSHNKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPDAKKVTYRINFKRVIMRKLIMGVADGEVLVDGKVIYTATDLKVGLFKDTN 170
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167   


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhh............hhhhh...eeeeee.........eeeeeee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeeee..eee.........eeeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f6r B  -2 SNAMVDKRESYTKEDLEASGRGELFGAGGPPLPAGNMLMMDRIVKMIEDGGSHNKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPDAKKVTYRINFKRVIMRKLIMGVADGEVLVDGKVIYTATDLKVGLFKDT 169
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F6R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F6R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F6R)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        FABA_YERPE | Q8ZG80: 5hd6

(-) Related Entries Specified in the PDB File

3q62 CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT LIGANDS RELATED ID: CSGID-IDP90513 RELATED DB: TARGETTRACK