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(-) Description

Title :  STRUCTURE OF RECJ COMPLEXED WITH DTMP
 
Authors :  Y. Hua, Y. Zhao, K. Cheng
Date :  04 Dec 15  (Deposition) - 15 Jun 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Recf Pathway, Dna End Resection, Two-Metal-Ion Catalysis, Single- Strand-Dna, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Cheng, H. Xu, X. Chen, L. Wang, B. Tian, Y. Zhao, Y. Hua
Structural Basis For Dna 5 -End Resection By Recj
Elife V. 5 14294 2016
PubMed-ID: 27058167  |  Reference-DOI: 10.7554/ELIFE.14294

(-) Compounds

Molecule 1 - SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE
    Atcc: ATCC13939
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET28
    Expression System Strain: BL21(DE3) ROSSETTA
    Expression System Taxid: 562
    Gene: RECJ
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
2TMP1Ligand/IonTHYMIDINE-5'-PHOSPHATE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:79 , ASP A:81 , ASP A:135 , MN A:802 , HOH A:903binding site for residue MN A 801
2AC2SOFTWAREASP A:83 , ASP A:135 , HIS A:159 , HIS A:160 , ASP A:223 , MN A:801 , HOH A:903binding site for residue MN A 802
3AC3SOFTWAREARG A:109 , TYR A:114 , HIS A:160 , ARG A:280 , GLY A:348 , SER A:371 , ARG A:373 , PHE A:394 , GLY A:395 , GLY A:396 , ALA A:401 , GLY A:402binding site for residue TMP A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F54)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:454 -Pro A:455

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F54)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F54)

(-) Exons   (0, 0)

(no "Exon" information available for 5F54)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:693
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhh.eeee......hhhhhhhhhhh..eeeee............eeehhhhh..........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee.......hhhhhhhhhhhhhh..eeeee..eeeee.....hhhhhhhh....eeeeee...eeeeee...hhhhhhhhhhhhhhh......eeee.ee.hhhhhhhhhhhhhhhhh..........eeeeeeeeeee.......eeeeee..eeeeee.......eeeeeeeeee..eeeeeeeee....ee.............hhhhhhhhhhhh.eee.hhhhhhhhhhhh...............eeee....hhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhh.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f54 A   4 PAHWLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRTELLALPLELTPNPALREAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANVHGFIPHRLNEGYGIHPDRVPEHAAAADLVVTVDCGVSNLDEVKSLLATGTEVVVTDHHAPGENFPECLVVHPHLTPDYDPDRHNLTGAGVAYHLLWAVYEELGRPEPRALLPLATLGTVADVAPLLGENRALVRAGLAEMARTELPGLRALMNEKRVRQPTARDVAFILAPRINAAGRMGEADRALELLTTPSDHEAKSLAAYLEIRNQERRKIQDDMFAQALQLADPNDPALVLTHDDWHAGVMGIVASKLVETFNRPVYIVAQGKGSVRSTPGISAVQGLRESRDLLGRFGGHPGAAGFSLDPQNFGALRERIHGYVRQFPTPVPAVRLDAPLPVAALTPELLSELSILEPFGEGNPRPLWHLRGPLTDTRLVGKQGDVLQFRFGGVKGMKYSERDDAAGERDVAAELALLELHAAALRPLAPLALAGTEEGLPTLPRLNPREAMTFLKTGAAAYAEQGVATYLRDNVPGLTLLDTNAPHPGGDLILYGLPPESALRRWLHEAQEQGGRVAFALGPKTLAELDAALTLAKLLPDSHTEAAQEAAADAYRSWQWAHHYRVLNDAGWSASVYAMLGLPVPAALPKAAEALALAA 704
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513||     531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        514|                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         523
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F54)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F54)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F54)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0EM60_DEIRD | D0EM60: 5f55 5f56

(-) Related Entries Specified in the PDB File

5f55 5f56