Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  THE CRYSTAL STRUCTURE OF AN EPOXIDE HYDROLASE FROM STREPTOMYCES CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS
 
Authors :  K. Tan, H. Li, R. Jedrzejczak, G. Babnigg, C. A. Bingman, R. Yennamalli, C. Y. Chang, B. Shen, G. N. Phillips Jr, A. Joachimiak, Midwest Cente Structural Genomics (Mcsg), Enzyme Discovery For Natural Pro Biosynthesis (Natpro)
Date :  03 Dec 15  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E  (2x)
Keywords :  Epoxide Hydrolase, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, H. Li, R. Jedrzejczak, G. Babnigg, C. A. Bingman, R. Yennamalli J. Lohman, C. Y. Chang, B. Shen, G. N. Phillips Jr, A. Joachimiak
The Crystal Structure Of An Epoxide Hydrolase From Streptomyces Carzinostaticus Subsp. Neocarzinostaticus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EPOXIDE HYDROLASE
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA
    Expression System Cell Line: BL21(DE3)MAGIC
    Expression System Plasmid: PMCSG81
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES CARZINOSTATICUS SUBSP. NEOCARZINOSTATICUS
    Organism Taxid: 167636

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): AB   
Biological Unit 2 (1x):   CD 
Biological Unit 3 (2x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 52)

Asymmetric Unit (7, 52)
No.NameCountTypeFull Name
15V45Ligand/Ion(1~{R},2~{R})-2,3-DIHYDRO-1~{H}-INDENE-1,2-DIOL
2ACT2Ligand/IonACETATE ION
3GOL7Ligand/IonGLYCEROL
4MSE35Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6PG41Ligand/IonTETRAETHYLENE GLYCOL
7TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (7, 26)
No.NameCountTypeFull Name
15V42Ligand/Ion(1~{R},2~{R})-2,3-DIHYDRO-1~{H}-INDENE-1,2-DIOL
2ACT2Ligand/IonACETATE ION
3GOL5Ligand/IonGLYCEROL
4MSE14Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6PG41Ligand/IonTETRAETHYLENE GLYCOL
7TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (3, 17)
No.NameCountTypeFull Name
15V42Ligand/Ion(1~{R},2~{R})-2,3-DIHYDRO-1~{H}-INDENE-1,2-DIOL
2ACT-1Ligand/IonACETATE ION
3GOL1Ligand/IonGLYCEROL
4MSE14Mod. Amino AcidSELENOMETHIONINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
6PG4-1Ligand/IonTETRAETHYLENE GLYCOL
7TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (3, 18)
No.NameCountTypeFull Name
15V42Ligand/Ion(1~{R},2~{R})-2,3-DIHYDRO-1~{H}-INDENE-1,2-DIOL
2ACT-1Ligand/IonACETATE ION
3GOL2Ligand/IonGLYCEROL
4MSE14Mod. Amino AcidSELENOMETHIONINE
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
6PG4-1Ligand/IonTETRAETHYLENE GLYCOL
7TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:82 , ARG A:84 , LEU A:164 , GLY A:165 , TYR A:166binding site for residue GOL A 401
02AC2SOFTWAREPRO A:92 , GLY A:165 , TYR A:166 , SER A:167 , ARG A:168binding site for residue GOL A 402
03AC3SOFTWARELEU A:293 , HOH A:523binding site for residue GOL A 403
04AC4SOFTWAREALA A:58 , ALA A:59 , ARG A:62 , HOH A:511 , HOH A:512binding site for residue GOL A 404
05AC5SOFTWAREHIS A:191 , HOH A:505 , HOH A:714binding site for residue GOL A 405
06AC6SOFTWAREASP A:21 , ARG A:51 , ASP A:52binding site for residue ACT A 406
07AC7SOFTWAREASP A:12binding site for residue PEG A 407
08AC8SOFTWAREASP A:175 , TRP A:179 , PHE A:199 , ILE A:201 , PHE A:228 , TYR A:235 , MSE A:236 , TRP A:268 , PRO A:312 , SER A:337 , ALA A:338 , HIS A:363 , HOH A:504binding site for residue 5V4 A 408
09AC9SOFTWAREGLU B:267 , TRS B:403 , HOH D:505binding site for residue ACT B 401
10AD1SOFTWAREHOH A:568 , ILE B:8 , PRO B:9 , ASP B:12 , LEU B:293 , HOH B:673binding site for residue PG4 B 402
11AD2SOFTWAREMSE B:266 , GLU B:267 , TRP B:268 , GLY B:269 , ALA B:335 , ACT B:401 , GLU D:216binding site for residue TRS B 403
12AD3SOFTWAREASP B:175 , TRP B:179 , PHE B:199 , ILE B:201 , PHE B:228 , TYR B:235 , MSE B:236 , TRP B:268 , PRO B:312 , SER B:337 , ALA B:338 , HIS B:363 , HOH B:502binding site for residue 5V4 B 404
13AD4SOFTWARELEU C:20 , ASP C:21 , TRP C:25 , HOH C:512 , HOH C:531binding site for residue GOL C 401
14AD5SOFTWAREASP C:175 , TRP C:179 , PHE C:199 , ILE C:201 , PHE C:228 , TYR C:235 , MSE C:236 , TRP C:268 , PRO C:312 , SER C:337 , ALA C:338 , HIS C:363 , HOH C:514binding site for residue 5V4 C 402
15AD6SOFTWAREASP D:175 , TRP D:179 , PHE D:199 , ILE D:201 , PHE D:228 , TYR D:235 , MSE D:236 , TRP D:268 , PRO D:312 , SER D:337 , ALA D:338 , HIS D:363 , HOH D:508binding site for residue 5V4 D 401
16AD7SOFTWAREPRO E:92 , GLY E:165 , TYR E:166 , SER E:167 , ARG E:168binding site for residue GOL E 401
17AD8SOFTWAREASP E:175 , TRP E:179 , PHE E:199 , ILE E:201 , PHE E:228 , TYR E:235 , MSE E:236 , TRP E:268 , PRO E:312 , SER E:337 , HIS E:363 , HOH E:502binding site for residue 5V4 E 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F4Z)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Trp A:99 -Pro A:100
2Trp B:99 -Pro B:100
3Trp C:99 -Pro C:100
4Trp D:99 -Pro D:100
5Trp E:99 -Pro E:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F4Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F4Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5F4Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....hhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeee..eeeeeeee.......eeeeee.....hhhhhh.hhhhhhhhhhh..hhhh.eeeeee................hhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhh...eeeeee.........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f4z A   1 mEPFRIVIPQADLDDLHRRLDATRWPSEIPGTGWSRGVPLDYLKELVGYWRDGYDWRAAEDRLNTVPQFTTEIDGTNVHFmHIRSAEPDALPmIITHGWPGSVAEFLDVIDPLTNPRAHGGDPADAFHLVIPSLPGFGFSGPTPEPGWNLPRVASAWAELmRRLGYSRYAVQGGDLGAWTSLTLSGVDHEHVVGTHVNFLITPPSGDPADLAGLGEQDLARLQLLAEFGAEGSGYmKIQSTRPQTLSYSLTDSPVGQLAWVVEKFmEWGDTDKSPEDAVDRDRLLTNVmIYWLTATAGSSAHFYYEISDVLPTAPTPPPPAPPLPTPLGVAVYPADSAKPVRRFAERAFPNIVHWAELERGGHFAALEQPGLFVSDLRAFARALRTSH 388
                            |       10        20        30        40        50        60        70        80|       90  |    100       110       120       130       140       150       160|      170       180       190       200       210       220       230     | 240       250       260     | 270       280       290       300       310       320       330       340       350       360       370       380        
                            |                                                                              81-MSE      93-MSE                                                             161-MSE                                                                    236-MSE                       266-MSE                289-MSE                                                                                               
                            1-MSE                                                                                                                                                                                                                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:390
                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee....hhhhhhhhhhhhhh................hhhhhhhhhhhhhh..hhhhhhhhhh...eeeeee..eeeeeeee.......eeeeee.....hhhhhh.hhhhhhhhhhh..hhhh.eeeeee................hhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhh...eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5f4z B   1 mEPFRIVIPQADLDDLHRRLDATRWPSEIPGTGWSRGVPLDYLKELVGYWRDGYDWRAAEDRLNTVPQFTTEIDGTNVHFmHIRSAEPDALPmIITHGWPGSVAEFLDVIDPLTNPRAHGGDPADAFHLVIPSLPGFGFSGPTPEPGWNLPRVASAWAELmRRLGYSRYAVQGGDLGAWTSLTLSGVDHEHVVGTHVNFLITPPSGDPADLAGLGEQDLARLQLLAEFGAEGSGYmKIQSTRPQTLSYSLTDSPVGQLAWVVEKFmEWGDTDKSPEDAVDRDRLLTNVmIYWLTATAGSSAHFYYEISDVLPTAPTPPPPAPPLPTPLGVAVYPADSAKPVRRFAERAFPNIVHWAELERGGHFAALEQPGLFVSDLRAFARALRTSHHH 390
                            |       10        20        30        40        50        60        70        80|       90  |    100       110       120       130       140       150       160|      170       180       190       200       210       220       230     | 240       250       260     | 270       280       290       300       310       320       330       340       350       360       370       380       390
                            1-MSE                                                                          81-MSE      93-MSE                                                             161-MSE                                                                    236-MSE                       266-MSE                289-MSE                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:387
                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....hhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeee..eeeeeeee.......eeeeee.....hhhhhh.hhhhhhhhhhh..hhhh.eeeeee................hhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhh...eeeeee.........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f4z C   1 mEPFRIVIPQADLDDLHRRLDATRWPSEIPGTGWSRGVPLDYLKELVGYWRDGYDWRAAEDRLNTVPQFTTEIDGTNVHFmHIRSAEPDALPmIITHGWPGSVAEFLDVIDPLTNPRAHGGDPADAFHLVIPSLPGFGFSGPTPEPGWNLPRVASAWAELmRRLGYSRYAVQGGDLGAWTSLTLSGVDHEHVVGTHVNFLITPPSGDPADLAGLGEQDLARLQLLAEFGAEGSGYmKIQSTRPQTLSYSLTDSPVGQLAWVVEKFmEWGDTDKSPEDAVDRDRLLTNVmIYWLTATAGSSAHFYYEISDVLPTAPTPPPPAPPLPTPLGVAVYPADSAKPVRRFAERAFPNIVHWAELERGGHFAALEQPGLFVSDLRAFARALRTS 387
                            |       10        20        30        40        50        60        70        80|       90  |    100       110       120       130       140       150       160|      170       180       190       200       210       220       230     | 240       250       260     | 270       280       290       300       310       320       330       340       350       360       370       380       
                            1-MSE                                                                          81-MSE      93-MSE                                                             161-MSE                                                                    236-MSE                       266-MSE                289-MSE                                                                                              


Chain D from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....hhhhhhhhhhhhhh................hhhhhhhhhhhhhh..hhhhhhhhhh...eeeeee..eeeeeeee.......eeeeee.....hhhhhh.hhhhhhhhhhhh.hhhh.eeeeee................hhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhh...eeeeee.........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f4z D   1 mEPFRIVIPQADLDDLHRRLDATRWPSEIPGTGWSRGVPLDYLKELVGYWRDGYDWRAAEDRLNTVPQFTTEIDGTNVHFmHIRSAEPDALPmIITHGWPGSVAEFLDVIDPLTNPRAHGGDPADAFHLVIPSLPGFGFSGPTPEPGWNLPRVASAWAELmRRLGYSRYAVQGGDLGAWTSLTLSGVDHEHVVGTHVNFLITPPSGDPADLAGLGEQDLARLQLLAEFGAEGSGYmKIQSTRPQTLSYSLTDSPVGQLAWVVEKFmEWGDTDKSPEDAVDRDRLLTNVmIYWLTATAGSSAHFYYEISDVLPTAPTPPPPAPPLPTPLGVAVYPADSAKPVRRFAERAFPNIVHWAELERGGHFAALEQPGLFVSDLRAFARALRTSHHHH 391
                            |       10        20        30        40        50        60        70        80|       90  |    100       110       120       130       140       150       160|      170       180       190       200       210       220       230     | 240       250       260     | 270       280       290       300       310       320       330       340       350       360       370       380       390 
                            1-MSE                                                                          81-MSE      93-MSE                                                             161-MSE                                                                    236-MSE                       266-MSE                289-MSE                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....hhhhhhhhhhhhhh................hhhhhhhhhhhhhhh.hhhhhhhhhh...eeeeee..eeeeeeee.......eeeeee.....hhhhhh.hhhhhhhhhhh..hhhh.eeeeee................hhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh...eeeeee.........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeeee........hhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f4z E   1 mEPFRIVIPQADLDDLHRRLDATRWPSEIPGTGWSRGVPLDYLKELVGYWRDGYDWRAAEDRLNTVPQFTTEIDGTNVHFmHIRSAEPDALPmIITHGWPGSVAEFLDVIDPLTNPRAHGGDPADAFHLVIPSLPGFGFSGPTPEPGWNLPRVASAWAELmRRLGYSRYAVQGGDLGAWTSLTLSGVDHEHVVGTHVNFLITPPSGDPADLAGLGEQDLARLQLLAEFGAEGSGYmKIQSTRPQTLSYSLTDSPVGQLAWVVEKFmEWGDTDKSPEDAVDRDRLLTNVmIYWLTATAGSSAHFYYEISDVLPTAPTPPPPAPPLPTPLGVAVYPADSAKPVRRFAERAFPNIVHWAELERGGHFAALEQPGLFVSDLRAFARALRTSH 388
                            |       10        20        30        40        50        60        70        80|       90  |    100       110       120       130       140       150       160|      170       180       190       200       210       220       230     | 240       250       260     | 270       280       290       300       310       320       330       340       350       360       370       380        
                            1-MSE                                                                          81-MSE      93-MSE                                                             161-MSE                                                                    236-MSE                       266-MSE                289-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F4Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F4Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F4Z)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    5V4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PG4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TRS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Trp A:99 - Pro A:100   [ RasMol ]  
    Trp B:99 - Pro B:100   [ RasMol ]  
    Trp C:99 - Pro C:100   [ RasMol ]  
    Trp D:99 - Pro D:100   [ RasMol ]  
    Trp E:99 - Pro E:100   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5f4z
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q84HB1_STRCZ | Q84HB1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q84HB1_STRCZ | Q84HB1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5F4Z)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5F4Z)