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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIAL FATTY ACID O-METHYLTRANSFERASE Q154A MUTANT IN COMPLEX WITH SAH AND 3-HYDROXY-DECANOATE.
 
Authors :  N. Petronikolou, S. K. Nair
Date :  02 Dec 15  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fatty Acid Methyltransferase, 3-Hydroxy-Decanoate, Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Petronikolou, S. K. Nair
Biochemical Studies Of Mycobacterial Fatty Acid Methyltransferase: A Catalyst For The Enzymatic Production Of Biodiesel.
Chem. Biol. V. 22 1480 2015
PubMed-ID: 26526103  |  Reference-DOI: 10.1016/J.CHEMBIOL.2015.09.011

(-) Compounds

Molecule 1 - FATTY ACID O-METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Gene: MMAR_3356
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM MARINUM (STRAIN ATCC BAA-535 / M)
    Organism Taxid: 216594
    Strain: ATCC BAA-535 / M

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
15UF2Ligand/Ion(3~{S})-3-OXIDANYLDECANOIC ACID
2SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:19 , TYR A:24 , LEU A:35 , GLY A:64 , ALA A:66 , ASN A:70 , ASP A:98 , VAL A:99 , SER A:133 , PHE A:134 , TYR A:135 , SER A:150 , TRP A:151 , ALA A:152 , TRP A:155 , 5UF A:401 , HOH A:553 , HOH A:576 , HOH A:639 , HOH A:644 , HOH A:671binding site for residue SAH A 400
2AC2SOFTWARETYR A:24 , GLN A:31 , TRP A:151 , TRP A:155 , MET A:214 , ASN A:228 , PHE A:311 , LEU A:316 , SAH A:400 , HOH A:507binding site for residue 5UF A 401
3AC3SOFTWAREMET B:19 , TYR B:24 , LEU B:35 , GLY B:64 , ALA B:66 , ASN B:70 , ASP B:98 , VAL B:99 , SER B:133 , PHE B:134 , TYR B:135 , SER B:150 , TRP B:151 , ALA B:152 , TRP B:155 , 5UF B:401 , HOH B:543 , HOH B:566 , HOH B:592 , HOH B:614 , HOH B:615binding site for residue SAH B 400
4AC4SOFTWARETYR B:24 , GLN B:31 , TRP B:151 , TRP B:155 , MET B:214 , PHE B:311 , LEU B:316 , SAH B:400 , HOH B:508binding site for residue 5UF B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F2O)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ala A:54 -Pro A:55
2Ala A:269 -Pro A:270
3Ala B:54 -Pro B:55
4Ala B:269 -Pro B:270

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F2O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F2O)

(-) Exons   (0, 0)

(no "Exon" information available for 5F2O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhh.......eeeeeee....hhhhhhhhhhhh..hhhhh...eeeeeee............eeeeeee....................hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee.........hhhhhhhhhhhhhhhhhh...hhhhhhhh.......hhhhhhh......ee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f2o A  11 SVVVRPAPMESATYSQSSRLQAAGLSPAITLFEKAAQTVPLPDAPQPVVIADYGVATGHNSLKPMMAAINALRRRIREDRAIMVAHTDVPDNDFTALFRTLADDPDSYLHHDSASFASAVGRSFYTQILPSNTVSLGWSSWAIAWLSRIPAGAPELTDHVQVAYSKDERARAAYAHQAATDWQDFLAFRGRELCPGGRLVVLTMALDEHGHFGYRPMNDALVAALNDQVRDGLLRPEELRRMAIPVVARAEKDLRAPFAPRGWFEGLTIEQLDVFNAEDRFWAAFQSDGDAESFGAQWAGFARAALFPTLAAALDCGTGDPRATAFIEQLEASVADRLASQPEPMRIPLASLVLAKRA 368
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360        


Chain B from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh..hhhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhhhhhhhh.......eeeeeee....hhhhhhhhhhhh..hhhhhh..eeeeeee............eeeeeee....................hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeee.........hhhhhhhhhhhhhhhhhh...hhhhhhhh.......hhhhhhh......ee..eeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5f2o B  12 VVVRPAPMESATYSQSSRLQAAGLSPAITLFEKAAQTVPLPDAPQPVVIADYGVATGHNSLKPMMAAINALRRRIREDRAIMVAHTDVPDNDFTALFRTLADDPDSYLHHDSASFASAVGRSFYTQILPSNTVSLGWSSWAIAWLSRIPAGAPELTDHVQVAYSKDERARAAYAHQAATDWQDFLAFRGRELCPGGRLVVLTMALDEHGHFGYRPMNDALVAALNDQVRDGLLRPEELRRMAIPVVARAEKDLRAPFAPRGWFEGLTIEQLDVFNAEDRFWAAFQSDGDAESFGAQWAGFARAALFPTLAAALDCGTGDPRATAFIEQLEASVADRLASQPEPMRIPLASLVLAKR 367
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F2O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F2O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F2O)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:269 - Pro A:270   [ RasMol ]  
    Ala A:54 - Pro A:55   [ RasMol ]  
    Ala B:269 - Pro B:270   [ RasMol ]  
    Ala B:54 - Pro B:55   [ RasMol ]  
 

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 Related Entries

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        B2HHT4_MYCMM | B2HHT4: 5f2k 5f2n

(-) Related Entries Specified in the PDB File

5f2k 5f2n