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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE MAX BHLH DOMAIN IN COMPLEX WITH 5-CARBOXYL CYTOSINE DNA
 
Authors :  D. Wang, H. Hashimoto, X. Zhang, X. Cheng
Date :  25 Nov 15  (Deposition) - 14 Dec 16  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Keywords :  Bhlh Protein, 5-Carboxylcytosine Dna, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Wang, H. Hashimoto, X. Zhang, B. G. Barwick, S. Lonial, L. H. Boise, P. M. Vertino, X. Cheng
Max Is An Epigenetic Sensor Of 5-Carboxylcytosine And Is Altered In Multiple Myeloma.
Nucleic Acids Res. V. 45 2396 2017
PubMed-ID: 27903915  |  Reference-DOI: 10.1093/NAR/GKW1184

(-) Compounds

Molecule 1 - PROTEIN MAX
    Cell Line: HEK293T CELLS
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-HIS-SUMO
    Expression System Strain: BL21 (DE3) CODON PLUS
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 22-107
    Gene: MAX, BHLHD4
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CLASS D BASIC HELIX-LOOP-HELIX PROTEIN 4,BHLHD4,MYC- ASSOCIATED FACTOR X
 
Molecule 2 - DNA (5'-D(*AP*GP*TP*AP*GP*CP*AP*(1CC) P*GP*TP*GP*CP*TP*AP*CP*T)-3')
    Chains: B, D
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: 1CC IS 5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): AB  
Biological Unit 2 (2x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
11CC2Mod. Nucleotide5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
11CC2Mod. Nucleotide5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
11CC2Mod. Nucleotide5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 5EYO)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EYO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EYO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 5eyo A  20 HMADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKAR 106
                                    29        39        49        59        69        79        89        99       


Chain B from PDB  Type:DNA  Length:16
                                                
                 5eyo B   4 AGTAGCAxGTGCTACT  19
                                   |13      
                                  11-1CC    


Chain C from PDB  Type:PROTEIN  Length:88
                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 5eyo C  20 HMADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARS 107
                                    29        39        49        59        69        79        89        99        


Chain D from PDB  Type:DNA  Length:16
                                                
                 5eyo D   4 AGTAGCAxGTGCTACT  19
                                   |13      
                                  11-1CC
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EYO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EYO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EYO)

(-) Gene Ontology  (32, 32)

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 Related Entries

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UniProtKB/Swiss-Prot
        MAX_HUMAN | P61244: 1an2 1hlo 1nkp 1nlw 1r05

(-) Related Entries Specified in the PDB File

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