5EV8 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE IMP-1 IN COMPLEX WITH THE BISTHIAZOLIDINE INHIBITOR D-CS319

Authors :   P. Hinchliffe, J. Spencer

Date :   19 Nov 15 (Deposition) - 01 Jun 16 (Release) - 20 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Inhibitor, Carbapenemase, Antibiotic Resistance, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Hinchliffe, M. M. Gonzalez, M. F. Mojica, J. M. Gonzalez, V. Castillo, C. Saiz, M. Kosmopoulou, C. L. Tooke, L. I. Llarrull, G. Mahler, R. A. Bonomo, A. J. Vila, J. Spencer
Cross-Class Metallo-Beta-Lactamase Inhibition By Bisthiazolidines Reveals Multiple Binding Modes.
Proc. Natl. Acad. Sci. Usa V. 113 E3745 2016
PubMed-ID: 27303030 | Reference-DOI: 10.1073/PNAS.1601368113

Molecule 1 - BETA-LACTAMASE IMP-1
	Chains	:	A, B, C, D
	EC Number	:	3.5.2.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	POPIN-F
	Expression System Taxid	:	469008
	Expression System Variant	:	SOLU
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SERRATIA MARCESCENS
	Organism Taxid	:	615
	Synonym	:	BLAIMP,BETA-LACTAMASE TYPE II,PENICILLINASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 22)

No.	Name	Count	Type	Full Name
1	3R9	5	Ligand/Ion	(3S,5S,7AR)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2	CL	1	Ligand/Ion	CHLORIDE ION
3	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
5	NA	1	Ligand/Ion	SODIUM ION
6	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	3R9	2	Ligand/Ion	(3S,5S,7AR)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	-1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
5	NA	-1	Ligand/Ion	SODIUM ION
6	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	3R9	1	Ligand/Ion	(3S,5S,7AR)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
5	NA	-1	Ligand/Ion	SODIUM ION
6	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (3, 3)

No.	Name	Count	Type	Full Name
1	3R9	1	Ligand/Ion	(3S,5S,7AR)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	NA	-1	Ligand/Ion	SODIUM ION
6	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	3R9	1	Ligand/Ion	(3S,5S,7AR)-5-(SULFANYLMETHYL)TETRAHYDRO[1,3]THIAZOLO[4,3-B][1,3]THIAZOLE-3-CARBOXYLIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	DMS	-1	Ligand/Ion	DIMETHYL SULFOXIDE
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	NA	-1	Ligand/Ion	SODIUM ION
6	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:77 , HIS A:79 , HIS A:139 , ZN A:302 , 3R9 A:303	binding site for residue ZN A 301
02	AC2	SOFTWARE	ASP A:81 , CYS A:158 , HIS A:197 , ZN A:301 , 3R9 A:303	binding site for residue ZN A 302
03	AC3	SOFTWARE	VAL A:31 , HIS A:79 , ASP A:81 , HIS A:139 , CYS A:158 , LYS A:161 , ASN A:167 , HIS A:197 , ZN A:301 , ZN A:302	binding site for residue 3R9 A 303
04	AC4	SOFTWARE	GLY A:110 , LYS A:111 , VAL A:112 , HOH A:428 , TRP C:28 , CL C:307	binding site for residue 3R9 A 304
05	AC5	SOFTWARE	ASP B:81 , CYS B:158 , HIS B:197 , ZN B:302 , 3R9 B:303	binding site for residue ZN B 301
06	AC6	SOFTWARE	HIS B:77 , HIS B:79 , HIS B:139 , ZN B:301 , 3R9 B:303	binding site for residue ZN B 302
07	AC7	SOFTWARE	HIS B:77 , HIS B:79 , ASP B:81 , HIS B:139 , CYS B:158 , LYS B:161 , LEU B:165 , GLY B:166 , ASN B:167 , HIS B:197 , ZN B:301 , ZN B:302 , HOH B:443	binding site for residue 3R9 B 303
08	AC8	SOFTWARE	GLU B:65 , THR B:83 , GLY B:84 , ILE B:86 , GLU B:87 , VAL B:112 , HOH B:423	binding site for residue EDO B 304
09	AC9	SOFTWARE	ASN A:116 , ASN B:90 , VAL B:112 , GLN B:113 , HOH B:455	binding site for residue EDO B 305
10	AD1	SOFTWARE	TYR A:97 , LEU A:125 , LYS B:107 , GLN B:113 , HOH B:410 , HOH B:430	binding site for residue EDO B 306
11	AD2	SOFTWARE	GLU B:14 , GLY B:15 , VAL B:16 , VAL B:38 , LEU B:39 , GLU B:150 , ARG B:151 , HOH B:435	binding site for residue DMS B 307
12	AD3	SOFTWARE	HIS C:77 , HIS C:79 , HIS C:139 , ZN C:302 , 3R9 C:303	binding site for residue ZN C 301
13	AD4	SOFTWARE	CYS C:158 , HIS C:197 , ZN C:301 , 3R9 C:303	binding site for residue ZN C 302
14	AD5	SOFTWARE	GLU A:87 , GLU C:23 , HIS C:77 , HIS C:79 , HIS C:139 , CYS C:158 , LYS C:161 , LEU C:165 , GLY C:166 , ASN C:167 , HIS C:197 , ZN C:301 , ZN C:302	binding site for residue 3R9 C 303
15	AD6	SOFTWARE	LYS C:108 , ASP C:109 , ASP C:170 , HOH C:413 , HOH C:458	binding site for residue EDO C 304
16	AD7	SOFTWARE	SER C:99 , PHE C:118 , GLY C:120 , HOH C:403 , HOH C:453	binding site for residue DMS C 305
17	AD8	SOFTWARE	3R9 A:304	binding site for residue CL C 307
18	AD9	SOFTWARE	HIS D:77 , HIS D:79 , HIS D:139 , ZN D:302 , 3R9 D:303	binding site for residue ZN D 301
19	AE1	SOFTWARE	ASP D:81 , CYS D:158 , HIS D:197 , ZN D:301 , 3R9 D:303	binding site for residue ZN D 302
20	AE2	SOFTWARE	HIS D:79 , ASP D:81 , HIS D:139 , CYS D:158 , LYS D:161 , GLY D:166 , ASN D:167 , HIS D:197 , ZN D:301 , ZN D:302	binding site for residue 3R9 D 303
21	AE3	SOFTWARE	LYS C:108 , GLY D:27	binding site for residue EDO D 304

(no "SS Bond" information available for 5EV8)

(no "Cis Peptide Bond" information available for 5EV8)

(no "SAP(SNP)/Variant" information available for 5EV8)

(no "PROSITE Motif" information available for 5EV8)

(no "Exon" information available for 5EV8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eeee..eeeee...eeee...........eeee....eeeeehhh..............hhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ev8 A   3 SLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESK 221
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Chain B from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eee...eeeee...eeee...........eee.....eeeeehhh..............hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ev8 B   3 SLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESK 221
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212

Chain C from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eee...eeeee...eeee...........eeee....eeeeehhh..............hhhhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ev8 C   3 SLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSK 225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222

Chain D from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..eeeeeeeeee...eeeeeeeeeeee..eeeee....hhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhh...eeeehhhhhhhhhh......eee...eeeee...eeee...........eeee....eeeeehhh..............hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ev8 D   4 LPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESK 221
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213

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Ligands, Modified Residues, Ions (6, 22)

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