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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FIRST TWO DOMAINS OF THE INITIATION MODULE OF LGRA
 
Authors :  J. M. Reimer, M. N. Aloise, T. M. Schmeing
Date :  16 Nov 15  (Deposition) - 20 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.46
Chains :  Asym./Biol. Unit :  A
Keywords :  Nrps, Initiation Module, Formylation Domain, Ligase, Adenylation Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Reimer, M. N. Aloise, P. M. Harrison, T. M. Schmeing
Synthetic Cycle Of The Initiation Module Of A Formylating Nonribosomal Peptide Synthetase.
Nature V. 529 239 2016
PubMed-ID: 26762462  |  Reference-DOI: 10.1038/NATURE16503

(-) Compounds

Molecule 1 - LINEAR GRAMICIDIN SYNTHASE SUBUNIT A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-584
    Gene: LGRA
    Organism Scientific: BREVIBACILLUS PARABREVIS
    Organism Taxid: 54914

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1FMT3Ligand/IonFORMIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:545 , PRO A:546 , GLU A:547 , LEU A:548binding site for residue FMT A 701
2AC2SOFTWAREASN A:71 , HIS A:73 , ASP A:108binding site for residue FMT A 702
3AC3SOFTWARETYR A:55binding site for residue FMT A 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ES6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:77 -Pro A:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ES6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ES6)

(-) Exons   (0, 0)

(no "Exon" information available for 5ES6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:583
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh..eeeee.......hhhhh...eeeee......hhhhhhhh...eeeee.......ee.hhhhhhhhh....eeeeee.........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh.............eehhhhhhhhh.....hhhhhhhhhhhhh...........hhhhhhhhhhhhh...eeeee..eeeehhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhh...eeee...hhhhhh...eeee..hhhhh...............eeeeeee.....eeeeeehhhhhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh...eeee.hhhhh.hhhhhhhhhhhhh..eeeeehhhhhhhh........eeeee.............eeeeee.hhhhh...eeeee..........ee...eeeeee............eeeeeee.....ee..hhhhhhhheee......eeeeeeeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5es6 A   1 MGRILFLTTFMSKGNKVVRYLESLHHEVVICQEKVHAQSANLQEIDWIVSYAYGYILDKEIVSRFRGRIINLHPSLLPWNKGRDPVFWSVWDETPKGVTIHLIDEHVDTGDILVQEEIAFADEDTLLDCYNKANQAIEELFIREWENIVHGRIAPYRQTAGGTLHFKADRDFYKNLNMTTVRELLALKRLCAEPKRGEKPIDKTFHQLFEQQVEMTPDHVAVVDRGQSLTYKQLNERANQLAHHLRGKGVKPDDQVAIMLDKSLDMIVSILAVMKAGGAYVPIDPDYPGERIAYMLADSSAAILLTNALHEEKANGACDIIDVHDPDSYSENTNNLPHVNRPDDLVYVMYTSTGLAKGVMIEHHNLVNFCEWYRPYFGVTPADKALVYSSFSFDGSALDIFTHLLAGAALHIVPSERKYDLDALNDYCNQEGITISYLPTGAAEQFMQMDNQSFRVVITGGDVLKKIERNGTYKLYNGYGPTECTIMVTMFEVDKPYANIPIGKPIDRTRILILDEALALQPIGVAGELFIVGEGLGRGYLNRPELTAEKFIVHPQTGERMYRTGDRARFLPDGNIEFLGRLD 585
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350 ||    362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582   
                                                                                                                                                                                                                                                                                                                                                                                         352|                                                                                                                                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                                                          355
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ES6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ES6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ES6)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu A:77 - Pro A:78   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LGRA_BREPA | Q70LM7: 5es5 5es7 5es8 5es9 5jnf

(-) Related Entries Specified in the PDB File

5es5 5ES5 CONTAINS A LONGER CONSTRUCT OF THE PROTEIN THAT CONTAINS THE FULL ADENYLATION DOMAIN.
5es7 5ES7 CONTAINS THE SAME PROTEIN SOAKED WITH FON, AMPCPP, AND VALINE.
5es8 5ES8 CONTAINS A LONGER CONSTRUCT OF THE PROTEIN, LGRA, SHOWN IN THE THIOLATION STATE.
5es9 5ES9 CONTAINS A LONGER CONSTRUCT OF THE PROTEIN, LGRA, SHOWN IN THE FORMYLATION STATE.