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(-) Description

Title :  QUORUM-SENSING SIGNAL INTEGRATOR LUXO - RECEIVER+CATALYTIC DOMAINS
 
Authors :  T. Shah, H. B. Selcuk, P. D. Jeffrey, F. M. Hughson
Date :  11 Nov 15  (Deposition) - 20 Apr 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Quorum Sensing, Aaa+ Protein, Receiver Domain, Atpase, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Boyaci, T. Shah, A. Hurley, B. Kokona, Z. Li, C. Ventocilla, P. D. Jeffrey, M. F. Semmelhack, R. Fairman, B. L. Bassler, F. M. Hughso
Structure, Regulation, And Inhibition Of The Quorum-Sensing Signal Integrator Luxo.
Plos Biol. V. 14 02464 2016
PubMed-ID: 27219477  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1002464

(-) Compounds

Molecule 1 - PUTATIVE REPRESSOR PROTEIN LUXO
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQLINKH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RECEIVER+CATALYTIC DOMAINS (UNP RESIDUES 1-387)
    Organism Scientific: PHOTOBACTERIUM ANGUSTUM
    Organism Taxid: 661

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2SO46Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:173 , THR A:174 , GLY A:175 , LYS A:176 , GLU A:177 , HOH A:629 , HOH A:651 , HOH A:666 , HOH A:673 , HOH A:742binding site for residue SO4 A 401
2AC2SOFTWAREILE A:47 , HIS A:73 , GLY A:74 , ASN A:75 , VAL A:76 , HOH A:553 , HOH A:554 , HOH A:687binding site for residue SO4 A 402
3AC3SOFTWARESER A:343 , PRO A:345 , LYS A:379 , LEU A:380 , HOH A:721 , HOH A:753binding site for residue SO4 A 403
4AC4SOFTWAREPRO A:203 , LYS A:204 , LYS A:253 , ARG A:256 , HOH A:505binding site for residue SO4 A 404
5AC5SOFTWARECYS A:244 , GLU A:245 , ARG A:284 , ARG A:294 , HOH A:542 , HOH A:564 , HOH A:624 , HOH A:637binding site for residue SO4 A 405
6AC6SOFTWAREILE A:258 , ARG A:302 , ARG A:360 , HOH A:548 , HOH A:593binding site for residue SO4 A 406
7AC7SOFTWAREARG A:296 , GLU A:297 , ASP A:298 , HOH A:848binding site for residue EDO A 407
8AC8SOFTWARELEU A:313 , ARG A:314 , GLY A:317 , GLU A:351 , TYR A:353binding site for residue EDO A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EP0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:104 -Pro A:105
2Pro A:385 -Pro A:386

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EP0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EP0)

(-) Exons   (0, 0)

(no "Exon" information available for 5EP0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:380
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhh...eeeee......hhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhh.....hhhhhhhhhh....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh......eeeee....hhhhhhhhhhh...........hhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhhhh...hhhhhhhhhhhhhhhhh...eehhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ep0 A   3 QRQVLMVEDTASVAALYKSYLNPLGLNVSIVGTGKEALSFIQDIIPDLILLDLRLPDMTGMEVLERVRKEHGNVPVVIMTAHGSIDIAVEAIRYGAQDFLIKPCEADRLRITVNKALKAESTSTQSKQSDGAQYQGFIGNSLPMQAVYRVIESAASSKATVFITGESGTGKEVCAEAIHAASPRHDKPFIALNCAAIPKDLIESELFGHVKGAFTTERQGAVEMAHNGTLMLDELCEMDLDLQSKLLRFIQTGTYQKVGSSKMSSVDVRFVCATNRNPWEEVQEGRFREDLYYRLHVIPISLPPLRERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLNTDDEVKLEMVPPPIL 388
                                    12        22        32        42        52        62        72        82        92       102       112       122||     135       145       155       165       175       185       195       205       215    || 228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388
                                                                                                                                                  123|                                                                                          220|                                                                                                                                                                    
                                                                                                                                                   127                                                                                           224
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EP0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EP0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EP0)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q1ZS18_PHOAS | Q1ZS18: 5ep1 5ep2 5ep3 5ep4

(-) Related Entries Specified in the PDB File

5ep1 5ep2 5ep3 5ep4