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(-) Description

Title :  CRYSTAL STRUCTURE OF CHROMOBOX HOMOLOG 7 (CBX7) CHROMODOMAIN WITH MS351
 
Authors :  C. Ren, M. M. Zhou
Date :  02 Nov 15  (Deposition) - 09 Mar 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Transcription, Inhibitor, Transcription-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Ren, S. G. Smith, K. Yap, S. Li, J. Li, M. Mezei, Y. Rodriguez, A. Vincek, F. Aguilo, M. J. Walsh, M. M. Zhou
Structure-Guided Discovery Of Selective Antagonists For The Chromodomain Of Polycomb Repressive Protein Cbx7.
Acs Med. Chem. Lett. V. 7 601 2016
PubMed-ID: 27326334  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.6B00042

(-) Compounds

Molecule 1 - CHROMOBOX PROTEIN HOMOLOG 7
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-CODONPLUS
    Expression System Taxid: 511693
    Fragment: RESIDUES 1-71
    Gene: CBX7, D15ERTD417E
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
15PZ1Ligand/Ion(1~{R})-2-[2-AZANYLIDENE-3-[(2-METHYLPHENYL)METHYL]BENZIMIDAZOL-1-YL]-1-(3,4-DICHLOROPHENYL)ETHANOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
15PZ1Ligand/Ion(1~{R})-2-[2-AZANYLIDENE-3-[(2-METHYLPHENYL)METHYL]BENZIMIDAZOL-1-YL]-1-(3,4-DICHLOROPHENYL)ETHANOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
15PZ2Ligand/Ion(1~{R})-2-[2-AZANYLIDENE-3-[(2-METHYLPHENYL)METHYL]BENZIMIDAZOL-1-YL]-1-(3,4-DICHLOROPHENYL)ETHANOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:8 , GLN A:9 , PHE A:11 , TRP A:32 , TRP A:35 , THR A:41 , MET A:55 , GLU A:62 , ARG A:65binding site for residue 5PZ A 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EJW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EJW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EJW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EJW)

(-) Exons   (0, 0)

(no "Exon" information available for 5EJW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee....................eeeeeeeeee..eeeeeeee...hhhh.eeee.hhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 5ejw A -11 HHSSGLVPRGSHMELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASG  68
                                    -2         8        18        28        38        48        58        68
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EJW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EJW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EJW)

(-) Gene Ontology  (16, 16)

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  5ejw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CBX7_MOUSE | Q8VDS3: 2kvm 4x3k 4x3s 4x3t 4x3u

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