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(-) Description

Title :  STRUCTURE OF DICTYOSTELIUM DISCOIDEUM MYOSIN VII MYTH4-FERM MF2 DOMAIN, MUTANT 1
 
Authors :  V. J. Planelles-Herrero, H. Sirkia, Y. Sourigues, M. A. Titus, A. Houdu
Date :  02 Nov 15  (Deposition) - 06 Jul 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Myosin, Motor Myosin, Myosin Tail, Myth4-Ferm, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. J. Planelles-Herrero, F. Blanc, S. Sirigu, H. Sirkia, J. Clause, Y. Sourigues, D. O. Johnsrud, B. Amigues, M. Cecchini, S. P. Gilbert, A. Houdusse, M. A. Titus
Myosin Myth4-Ferm Structures Highlight Important Principles Of Convergent Evolution.
Proc. Natl. Acad. Sci. Usa V. 113 E2906 2016
PubMed-ID: 27166421  |  Reference-DOI: 10.1073/PNAS.1600736113

(-) Compounds

Molecule 1 - MYOSIN-I HEAVY CHAIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Expression System Variant: AI
    Gene: MYOI, DDB_G0274455
    Mutation: YES
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM
    Organism Taxid: 44689
    Synonym: CLASS VII UNCONVENTIONAL MYOSIN,DDMVII,DDM7

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EJS)

(-) Sites  (0, 0)

(no "Site" information available for 5EJS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EJS)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1His A:2030 -Pro A:2031
2Asn A:2282 -Pro A:2283
3His B:2030 -Pro B:2031
4Asn B:2283 -Pro B:2284
5Gly B:2330 -Asn B:2331

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EJS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EJS)

(-) Exons   (0, 0)

(no "Exon" information available for 5EJS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh..hhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhh....eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhhh.eeeeeee....eeeee....hhhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhh...hhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....eeeeee......eeeeee...eeeee......eeeeee.....eeee...eeeee........eeeee..hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ejs A 1854 SQLAQWASTRFRSFKRASTLNQDPNTAFYFNKDPIKESLIEMEAELSEEAIKNFSEIMMWMGDYPIPKGQTASLVIQSIISRGIENHELRDEIYCQAYRQTNKNPKVESAKKGFELIYFLSITFSPSDSLLQPFMEQLMSRNIAIQSSSPQLASLIAVCIEKLESHPIPSYQQRKMGPSATEIQSFRSNLENGDISTCKIRFIDQSTKLAKINTYTTIREITDTVCRQYGISQQSIKMFGISAVNETAGISKVVSETDMIYDVLARWEQSEEKGEFYFQVRRRFFLDDVNKILDQEHLWTDDDICFELTYCQIRDEWMKGLYTNVNEKDSSIIAAILIQLLYPNQSKLVLTKEVVRQVLPDQILNSQNIKVWISMIESQIFELVSQTPEYLKLMFINLIGSKSPLFGCTLFNIQQKENPPKAWLAINKKGVSIFDPHTKESKNFWTFQSISNVAFTDDTFCIMTGNLMKPIKQTFTTDEHSSIASVYQFYSSQLEH 2360
                                  1863      1873 ||   1894      1904      1914      1924      1934      1944      1954      1964      1974      1984      1994      2004      2014      2024      2034      2044      2054      2064      2074      2084      2094      2104      2114      2124      2134      2144      2154      2164      2174      2184      2194      2204      2214      2224      2234      2244      2254      2264      2274      2284      2294      2304      2314      2324      2334      2344      2354      
                                              1875|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
                                               1887                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:485
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..hhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhh....eeeee.....eeeee.....hhhhhhhhhhhhhh.hhhhhh.eeeeeee....eeeee....hhhhhhhhhhh......eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh........hhhhhh...hhhhhh..hhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhh.....eeeeee......eeeeee...eeeee......eeeeee.....eeee...eeeee......eeeee..hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ejs B 1855 QLAQWASTRFRSFKRASNTAFYFNKDPIKESLIEMEAELSEEAIKNFSEIMMWMGDYPIPKGQTASLVIQSIISRGIENHELRDEIYCQAYRQTNKNPKVESAKKGFELIYFLSITFSPSDSLLQPFMEQLMSRNIAIQSSSPQLASLIAVCIEKLESHPIPSYQQRKMGPSATEIQSFRSNLENGDISTCKIRFIDQSTKLAKINTYTTIREITDTVCRQYGISQQSIKMFGISAVNETAGISKVVSETDMIYDVLARWEQSEEKGEFYFQVRRRFFLDDVNKILDQEHLWTDDDICFELTYCQIRDEWMKGLYTNVNEKDSSIIAAILIQLLYPNQSKLVLTKEVVRQVLPDQILNSQNIKVWISMIESQIFELVSQTPEYLKLMFINLIGSKSPLFGCTLFNIQQKENPPKAWLAINKKGVSIFDPHTKESKNFWTFQSISNVAFTDDTFCIMTGNKPIKQTFTTDEHSSIASVYQFYSSQL 2359
                                  1864      1891      1901      1911      1921      1931      1941      1951      1961      1971      1981      1991      2001      2011      2021      2031      2041      2051      2061      2071      2081      2091      2101      2111      2121      2131      2141      2151      2161      2171      2181      2191      2201      2211      2221      2231      2241   || 2252      2262      2272      2282      2292      2302      2312      2322      2334      2344      2354     
                                         1871|                                                                                                                                                                                                                                                                                                                                                                2245|                                                                                2331|                         
                                          1889                                                                                                                                                                                                                                                                                                                                                                 2247                                                                                 2334
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EJS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EJS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EJS)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:2282 - Pro A:2283   [ RasMol ]  
    Asn B:2283 - Pro B:2284   [ RasMol ]  
    Gly B:2330 - Asn B:2331   [ RasMol ]  
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  5ejs
    Family and Domain Information: ProDom | SYSTERS
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYOI_DICDI | Q9U1M8: 2i0n 5ejq 5ejr 5ejy

(-) Related Entries Specified in the PDB File

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