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(-) Description

Title :  QUINOLONE-STABILIZED CLEAVAGE COMPLEX OF TOPOISOMERASE IV FROM KLEBSIELLA PNEUMONIAE
 
Authors :  D. A. Veselkov, I. Laponogov, X. -S. Pan, J. Selvarajah, A. Branstrom, L. M. Fisher, M. R. Sanderson
Date :  30 Oct 15  (Deposition) - 13 Apr 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,E,F,G,H,I  (1x)
Biol. Unit 2:  B,C,D,J,K,L  (1x)
Keywords :  Klebsiella Pneumoniae, Cleavage Complex, Quinolone, Levofloxacin, Topoisomerase Iv, Dna Binding, Isomerase, Isomerase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Veselkov, I. Laponogov, X. S. Pan, J. Selvarajah, G. B. Skamrova, A. Branstrom, J. Narasimhan, J. V. Prasad, L. M. Fisher, M. R. Sanderso
Structure Of A Quinolone-Stabilized Cleavage Complex Of Topoisomerase Iv From Klebsiella Pneumoniae And Comparison With A Related Streptococcus Pneumoniae Complex.
Acta Crystallogr D Struct V. 72 488 2016 Biol
PubMed-ID: 27050128  |  Reference-DOI: 10.1107/S2059798316001212

(-) Compounds

Molecule 1 - DNA TOPOISOMERASE 4 SUBUNIT B,DNA TOPOISOMERASE 4 SUBUNIT A
    Chains: A, B, G, J
    EC Number: 5.99.1.3, 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PARC, KPR_4469, SL72_02036
    Organism Scientific: KLEBSIELLA PNEUMONIAE
    Organism Taxid: 573
    Strain: ATCC 35657
    Synonym: TOPOISOMERASE IV SUBUNIT B,TOPOISOMERASE IV SUBUNIT A
 
Molecule 2 - SYMMETRISED E-SITE (PRE-CUT)
    Chains: E, C, H, K
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYMMETRISED E-SITE
    Synthetic: YES
 
Molecule 3 - SYMMETRISED E-SITE (PRE-CUT)
    Chains: F, D, I, L
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYMMETRISED E-SITE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): A   EFGHI   
Biological Unit 2 (1x):  BCD     JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1LFX4Ligand/Ion(3S)-9-FLUORO-3-METHYL-10-(4-METHYLPIPERAZIN-1-YL)-7-OXO-2,3-DIHYDRO-7H-[1,4]OXAZINO[2,3,4-IJ]QUINOLINE-6-CARBOXYLIC ACID
2MG8Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1LFX2Ligand/Ion(3S)-9-FLUORO-3-METHYL-10-(4-METHYLPIPERAZIN-1-YL)-7-OXO-2,3-DIHYDRO-7H-[1,4]OXAZINO[2,3,4-IJ]QUINOLINE-6-CARBOXYLIC ACID
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1LFX2Ligand/Ion(3S)-9-FLUORO-3-METHYL-10-(4-METHYLPIPERAZIN-1-YL)-7-OXO-2,3-DIHYDRO-7H-[1,4]OXAZINO[2,3,4-IJ]QUINOLINE-6-CARBOXYLIC ACID
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:491 , ASP A:493binding site for residue MG A 1501
02AC2SOFTWARELFX F:100binding site for residue MG A 1502
03AC3SOFTWARELYS A:442 , SER A:1080 , MG A:1502 , DT E:15 , DC F:4 , DA F:5 , DG I:1binding site for residue LFX F 100
04AC4SOFTWAREASP B:491 , ASP B:493binding site for residue MG B 1501
05AC5SOFTWARESER B:1080 , DT C:15 , DC D:4 , DA D:5 , DG L:1 , MG L:101binding site for residue LFX D 100
06AC6SOFTWAREASP G:491 , ASP G:493binding site for residue MG G 1501
07AC7SOFTWARELFX I:100binding site for residue MG G 1502
08AC8SOFTWAREDG F:1 , SER G:1080 , MG G:1502 , DT H:15 , DC I:4 , DA I:5binding site for residue LFX I 100
09AC9SOFTWAREASP J:491 , ASP J:493binding site for residue MG J 1501
10AD1SOFTWARELFX D:100binding site for residue MG L 101
11AD2SOFTWARELFX L:103binding site for residue MG L 102
12AD3SOFTWAREDG D:1 , SER J:1080 , DT K:15 , DC L:4 , DA L:5 , MG L:102binding site for residue LFX L 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EIX)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Leu A:1099 -Gly A:1100
2Glu A:1248 -Asp A:1249
3Leu B:1099 -Gly B:1100
4Glu B:1248 -Asp B:1249
5Leu G:1099 -Gly G:1100
6Glu G:1248 -Asp G:1249
7Leu J:1099 -Gly J:1100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EIX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EIX)

(-) Exons   (0, 0)

(no "Exon" information available for 5EIX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:702
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeeee.hhhhhhhhhh......eeeee.............hhhhhhhhhhhhhhhhh..............eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee....eeeee..eeeee.hhhhhhhhhhhhh......ee.........hhhhhhhhhh......eeeee....hhhhhhhhhhhhhh...hhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee...............eee....hhhhhh........eee......eee.......hhhhhh..eee....eee....hhhhhhhhhhhhhhh...hhhhhhh............ee.hhhhhhhhhhhheeeeeee.eeee....eeeee......hhhhhhhhhhhhhh.....eeeeee.........eeeee.....hhhhhhhhhhhhh..eeeeeee.eee.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5eix A  400 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGAPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHE 1482
                                   409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619    ||1007      1017      1027      1037      1047      1057      1067      1077      1087      1097      1107 ||   1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480  
                                                                                                                                                                                                                                                          624|                                                                                                      1109|                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                          1003                                                                                                       1113                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:701
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.hhhhhhhhhh......eeeee.............hhhhhhhhhhhhhhhhh..............eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee....eeeee..eeeee.hhhhhhhhhhhhhhh....ee.........hhhhhhhhhh......eeeee....hhhhhhhhhhhhhh...hhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee...............eee....hhhhhh........eee......eee.......hhhhhh..eee....eee....hhhhhhhhhhhhhhh...hhhhhhh............ee.hhhhhhhhhhhheeeeeee.eeee....eeeee......hhhhhhhhhhhhhh.....eeeeee.........eeeee.....hhhhhhhhhhhhh..eeeeeee.eee.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5eix B  400 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIDLGKEVYYALTEEEKTGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGAPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHE 1482
                                   409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619    ||1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108||    1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481 
                                                                                                                                                                                                                                                          624|                                                                                                     1109|                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                          1004                                                                                                      1113                                                                                                                                                                                                                                                                                                                                                                                 


Chain C from PDB  Type:DNA  Length:8
                                         
                5eix C    8 CGTTGTAT   15


Chain D from PDB  Type:DNA  Length:12
                                             
                5eix D    1 GATCATACAACG   12
                                    10  


Chain E from PDB  Type:DNA  Length:8
                                         
                5eix E    8 CGTTGTAT   15


Chain F from PDB  Type:DNA  Length:12
                                             
                5eix F    1 GATCATACAACG   12
                                    10  


Chain G from PDB  Type:PROTEIN  Length:671
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.hhhhhhhhhh......eeeee.............hhhhhhhhhhhhhhhhh..............eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee....................hhhhhhhhhh......eeeee....hhhhhhhhhhhhhh...hhhhhhhhhhh.eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee...............eee....hhhhhh........eee......eee.......hhhhhh..eee....eee....hhhhhhhhhhhhhhh...hhhhhhh............ee.hhhhhhhhhhhheeeeeee.eeee....eeeee......hhhhhhhhhhhhhh.....eeeeee.........eeeee.....hhhhhhhhhhhhh..eeeeeee.eee.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5eix G  400 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIYALVQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGAPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSKEDGAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLHE 1482
                                   409       419       429       439       449       459       469       479       489       499       509       519       529|| ||  566       576       586       596       606       616      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108||    1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481 
                                                                                                                                                            530| ||                                                           623|                                                                                                   1109|                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                             538 ||                                                           1006                                                                                                    1113                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                               540|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
                                                                                                                                                                561                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        


Chain H from PDB  Type:DNA  Length:8
                                         
                5eix H    8 CGTTGTAT   15


Chain I from PDB  Type:DNA  Length:12
                                             
                5eix I    1 GATCATACAACG   12
                                    10  


Chain J from PDB  Type:PROTEIN  Length:679
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee.hhhhhhhhhh......eeeee.............hhhhhhhhhhhhhhhhh..............eeeee...hhhhhhhhhhhhhhhhhhhhhhhhh..eeee....ee...ee.hhhhhhhhhhhh...........hhhhhhhhhh......eeeee....hhhhhhhhhhhhhh...hhhhhhhhhhh..eeehhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh........eehhhhhhhhhhhh...hhhhhhhhhhhhhh.........eee...............eee....hhhhhh........eee......eee.......hhhhhh..eee....eee....hhhhhhhhhhhhhhh...hhhhhhh............ee.hhhhhhhhhhhheeeeeee.............hhhhhhhhhhhhhh.....eeeeee.........eeeee.....hhhhhhhhhhhhh..eeeeeee.eee.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5eix J  400 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRTLVKEGHVYVALPPLYRIVYYALTEEEKTGVLEQLKRQRFKGLGEMNPMQLRETTLDPNTRRLVQLVISDEDEQQTTAIMDMLLAKKRSEDRRNWLQEKGERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLGDGQGNWGAPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWSITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDDRRSPLH 1481
                                   409       419       429       439       449       459       469       479       489       499       509       519       529||     544       554|      571       581       591       601       611       621  ||  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245||    1262      1272      1282      1292      1302      1312      1322      1332      1342      1352      1362      1372      1382      1392      1402      1412      1422      1432      1442      1452      1462      1472         
                                                                                                                                                            530|               554|                                                           624|                                                                                                   1109|                                                                                                                                 1246|                                                                                                                                                                                                                                   
                                                                                                                                                             536                562                                                           1006                                                                                                    1113                                                                                                                                  1254                                                                                                                                                                                                                                   


Chain K from PDB  Type:DNA  Length:8
                                         
                5eix K    8 CGTTGTAT   15


Chain L from PDB  Type:DNA  Length:12
                                             
                5eix L    1 GATCATACAACG   12
                                    10
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EIX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EIX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EIX)

(-) Gene Ontology  (13, 19)

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  5eix
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    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
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  R4YE07_KLEPR | R4YE07
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  R4YHS8_KLEPR | R4YHS8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
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  5.99.1.3
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    Pathway: KEGG | MetaCyc
 
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    Disease Information: OMIM
 
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    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
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Access by UniProt ID/Accession number
  R4YE07_KLEPR | R4YE07
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  R4YHS8_KLEPR | R4YHS8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5EIX)

(-) Related Entries Specified in the PDB File

3ltn PD0305970-STABILISED CLEAVAGE COMPLEX OF TOPO IV FROM S. PNEUMONIAE
3rad INHIBITOR-STABILISED CLEAVAGE COMPLEX OF TOPOISOMERASE IIA FROM S. PNEUMONIAE (CLINAFLOXACIN)
3rae INHIBITOR-STABILISED CLEAVAGE COMPLEX OF TOPOISOMERASE IIA FROM S. PNEUMONIAE (LEVOFLOXACIN)
3raf INHIBITOR-STABILISED CLEAVAGE COMPLEX OF TOPOISOMERASE IIA FROM S. PNEUMONIAE (PD 0305970)
4i3h A THREE-GATE STRUCTURE OF TOPOISOMERASE IV FROM STREPTOCOCCUS PNEUMONIAE