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(-) Description

Title :  RESTING STATE OF RAT CYSTEINE DIOXYGENASE H155Q VARIANT
 
Authors :  M. Fellner, E. P. Tchesnokov, G. N. L. Jameson, S. M. Wilbanks
Date :  26 Oct 15  (Deposition) - 26 Oct 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Cysteine Dioxygenase, Non-Heme Mono-Iron, Cupin, Histidine To Glutamine Substitution, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Fellner, S. M. Wilbanks
Resting State Of Rat Cysteine Dioxygenase H155Q Variant
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYSTEINE DIOXYGENASE TYPE 1
    Chains: A
    EC Number: 1.13.11.20
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPR-IBA1/RATCDO/H155Q_VARIANT
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CDO1
    Mutation: YES
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: CYSTEINE DIOXYGENASE TYPE I,CDO-I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:86 , HIS A:88 , HIS A:140 , HOH A:404binding site for residue FE2 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EFU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:158 -Pro A:159

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EFU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EFU)

(-) Exons   (0, 0)

(no "Exon" information available for 5EFU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhh.......eeeeeehhhhh.eeeeeee.......ee.....eeeeeeee..eeeeee...........eeeeeee....eeee.....eeeee.......eeeeeeee....eeeee......eeeee....ee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5efu A   4 TELLKPRTLADLIRILHELFAGDEVNVEEVQAVLEAYESNPAEWALYAKFDQYRYTRNLVDQGNGKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTEPAVSLQLYSPPFDTCHAFDQRTGHKNKVTMTFHSKFGIRTP 190
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EFU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EFU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EFU)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CDO1_RAT | P21816: 2b5h 2gh2 3eln 4ieo 4iep 4ieq 4ier 4ies 4iet 4ieu 4iev 4iew 4iex 4iey 4iez 4jtn 4jto 4kwj 4kwk 4kwl 4pix 4piy 4piz 4pjy 4ubg 4ubh 4xet 4xez 4xf0 4xf1 4xf3 4xf4 4xf9 4xfa 4xfb 4xfc 4xff 4xfg 4xfh 4xfi 4yni 4ysf 4yyo 4z82 5ezw 5fdb 5i0r 5i0s 5i0t 5i0u

(-) Related Entries Specified in the PDB File

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