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(-) Description

Title :  STRUCTURE OF INFLUENZA B LEE PB2 CAP-BINDING DOMAIN
 
Authors :  X. Ma, S. Shia
Date :  23 Oct 15  (Deposition) - 18 Nov 15  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Cap-Binding Domain, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Xie, C. Wartchow, S. Shia, K. Uehara, M. Steffek, R. Warne, J. Sutton G. T. Muiru, V. H. Leonard, D. E. Bussiere, X. Ma
Molecular Basis Of Mrna Cap Recognition By Influenza B Polymerase Pb2 Subunit.
J. Biol. Chem. V. 291 363 2016
PubMed-ID: 26559973  |  Reference-DOI: 10.1074/JBC.M115.693051

(-) Compounds

Molecule 1 - POLYMERASE BASIC PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTRCHIS2B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CAP-BINDING DOMAIN, UNP RESIDUES 320-485
    Gene: PB2
    Organism Scientific: INFLUENZA B VIRUS
    Organism Taxid: 518987
    Strain: B/LEE/1940
    Synonym: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5EF9)

(-) Sites  (0, 0)

(no "Site" information available for 5EF9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EF9)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee..eeeeeee...eeeeeeee.....eeeeeeee..eeeeeee..eeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhh.hhhhhhh...............hhhhhhhhhhhhhhhhhhhhhheee......eeee.....ee.eee..eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ef9 A 324 RQRFGRLELKRISGRGFKNDEEILIGNGTIQKIGIWDGEEEFHVRCGECRGILKKSQMRMEKLLINSAKKEDMKDLIILCMVFSQDTRMFQGVRGEINFLNRAGQLLSPMYQLQRYFLNRSNDLFDQWGYEESPKASELHGINELMNASDYTLKGVVVTKNVDHHHHH 491
                                   333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EF9)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5ef9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PB2_INBLE | Q9QLL6: 5efa 5efc

(-) Related Entries Specified in the PDB File

5efa 5efc