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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 6'-ACETYLTRANSFERASE TYPE II
 
Authors :  A. M. Berghuis, D. L. Burk, O. M. Baettig, K. Shi
Date :  14 Oct 15  (Deposition) - 06 Jul 16  (Release) - 31 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gnat, Acetyltransferase, Aminoglycoside Resistance, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. M. Baettig, K. Shi, B. J. Yachnin, D. L. Burk, A. M. Berghuis
Comprehensive Characterization Of Ligand-Induced Plasticity Changes In A Dimeric Enzyme.
Febs J. V. 283 3029 2016
PubMed-ID: 27333541  |  Reference-DOI: 10.1111/FEBS.13788

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE 6'-ACETYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPLAAC-1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AAC(6 )-II
    Organism Scientific: ENTEROCOCCUS FAECIUM
    Organism Taxid: 1352
    Strain: C238

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:73 , LEU A:109 , GLY A:110 , TYR A:147 , HOH A:302 , HOH A:307 , HOH A:321 , HOH A:335binding site for residue PO4 A 201
2AC2SOFTWAREASN A:10 , LEU A:13 , GLN A:16 , ASP A:54binding site for residue EDO A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E96)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His A:74 -Pro A:75

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E96)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E96)

(-) Exons   (0, 0)

(no "Exon" information available for 5E96)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....eeeeeee..eeeeeeeeeeee...eeeeeeeee....hhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhh..eeeeee.........eeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e96 A   1 MIISEFDRNNPVLKDQLSDLLRLTWPEEYGDSSAEEVEEMMNPERIAVAAVDQDELVGFIGAIPQYGITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYLGTDDLDHEHPYEFYEKLGYKIVGVLPNANGWDKPDIWMAKTIIPRP 179
                                    10        20        30        40        50        60        70        80        90       100       110     ||144       154       164       174     
                                                                                                                                             116|                                      
                                                                                                                                              141
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E96)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E96)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E96)

(-) Gene Ontology  (1, 1)

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  5e96
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  Q47764_ENTFC | Q47764
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q47764_ENTFC | Q47764: 1b87 1n71 2a4n

(-) Related Entries Specified in the PDB File

1b87 1B87 CONTAINS THE SAME PROTEIN COMPLEXED WITH ACETYL COENZYME A
1n71 1N71 CONTAINS THE SAME PROTEIN COMPLEXED WITH COENZYME A