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(-) Description

Title :  CRYSTAL STRUCTURE OF GERANYLFARNESYL PYROPHOSPHATE SYNTHASES 2 FROM ARABIDOPSIS THALIANA
 
Authors :  C. Wang, Q. Chen, G. Wang, P. Zhang
Date :  14 Oct 15  (Deposition) - 11 Nov 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gfpps, Prenyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Wang, Q. Chen, D. Fan, J. Li, G. Wang, P. Zhang
Structural Analyses Of Short-Chain Prenyltransferases Identify An Evolutionarily Conserved Gfpps Clade In Brassicaceae Plants
Mol Plant 2015
PubMed: search  |  Reference-DOI: 10.1016/J.MOLP.2015.10.010

(-) Compounds

Molecule 1 - GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3, CHLOROPLASTIC
    Chains: A, B
    EC Number: 2.5.1.-, 2.5.1.1, 2.5.1.29, 2.5.1.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GGPP3, AT3G14550, MIE1.5
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: GGPS3,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE 3, DIMETHYLALLYLTRANSTRANSFERASE 3,FARNESYL DIPHOSPHATE SYNTHASE 3, FARNESYLTRANSTRANSFERASE 3,GERANYLTRANSTRANSFERASE 3

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E8H)

(-) Sites  (0, 0)

(no "Site" information available for 5E8H)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:4 -A:304

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:36 -Pro A:37
2Glu B:36 -Pro B:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E8H)

(-) Exons   (0, 0)

(no "Exon" information available for 5E8H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e8h A   4 CNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIAC 304
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163      |183       193       203       213       223       233       243||     266       276       286       296        
                                                                                                                                                                                                170|                                                            244|                                              
                                                                                                                                                                                                 181                                                             258                                              


Chain B from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5e8h B   7 HNSAFDFKLYMIRKAESVNAALDVSVPLREPVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSGLVAPERMIRAVVELARAIGTTGLVAGQMIDLAVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACR 305
                                    16        26        36||      48        58        68        78        88        98       108       118       128       138       148       158       168  ||   186       196       206       216       226       236 ||    265       275       285       295       305
                                                         37|                                                                                                                                171|                                                       238|                                               
                                                          40                                                                                                                                 180                                                        258
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E8H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E8H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E8H)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Glu A:36 - Pro A:37   [ RasMol ]  
    Glu B:36 - Pro B:37   [ RasMol ]  
 

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(-) Related Entries Specified in the PDB File

5e8k 5e8l