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(-) Description

Title :  ISOLATED SBD OF BIP
 
Authors :  Q. Liu, J. Yang, M. Nune, Y. Zong, L. Zhou
Date :  13 Oct 15  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym./Biol. Unit :  A
Keywords :  Molecular Chaperones; Hsp70; Bip; Protein Folding; Endoplasmic Reticulum; Allosteric Coupling, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Yang, M. Nune, Y. Zong, L. Zhou, Q. Liu
Close And Allosteric Opening Of The Polypeptide-Binding Sit In A Human Hsp70 Chaperone Bip.
Structure V. 23 2191 2015
PubMed-ID: 26655470  |  Reference-DOI: 10.1016/J.STR.2015.10.012

(-) Compounds

Molecule 1 - 78 KDA GLUCOSE-REGULATED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: UNP RESIDUES 418-637
    Gene: HSPA5, GRP78
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GRP-78,ENDOPLASMIC RETICULUM LUMENAL CA(2+)-BINDING PROTEIN GRP78,HEAT SHOCK 70 KDA PROTEIN 5,IMMUNOGLOBULIN HEAVY CHAIN-BINDING PROTEIN,BIP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:476 , HIS A:477 , LEU A:478 , LYS A:523 , HOH A:807 , HOH A:813 , HOH A:817binding site for residue SO4 A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E85)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:443 -Pro A:444
2Ser A:588 -Glu A:589

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E85)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E85)

(-) Exons   (0, 0)

(no "Exon" information available for 5E85)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...eeeeee.......eeeeeeeee......eeeeeeee....hhhhheeeeeeeee...........eeeeeee.....eeeeeee.....eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.............ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e85 A 418 DVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSENLYFQGSNRLLLTG 652
                                   427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E85)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E85)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E85)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5e85
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRP78_HUMAN | P11021: 3iuc 3ldl 3ldn 3ldo 3ldp 5e84 5e86 5evz 5ex5 5exw 5ey4 5f0x 5f1x 5f2r

(-) Related Entries Specified in the PDB File

5e84 5e86