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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CNTN5 FN1-FN3 DOMAINS
 
Authors :  R. M. Nikolaienko, S. Bouyain
Date :  07 Oct 15  (Deposition) - 31 Aug 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.69
Chains :  Asym./Biol. Unit :  A
Keywords :  Neural Cell Adhesion Molecule, Fibronectin Type Iii Domains, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Nikolaienko, M. Hammel, V. Dubreuil, R. Zalmai, D. R. Hall, N. Mehzabeen, S. J. Karuppan, S. Harroch, S. L. Stella, S. Bouyain
Structural Basis For Interactions Between Contactin Family Members And Protein-Tyrosine Phosphatase Receptor Type G In Neural Tissues.
J. Biol. Chem. V. 291 21335 2016
PubMed-ID: 27539848  |  Reference-DOI: 10.1074/JBC.M116.742163

(-) Compounds

Molecule 1 - CONTACTIN-5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7HMP
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FN DOMAINS 1-3, UNP RESIDUES 671-969
    Gene: CNTN5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NEURAL RECOGNITION MOLECULE NB-2,HNB-2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PO41Ligand/IonPHOSPHATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:709 , ARG A:787 , HIS A:788 , HOH A:1102binding site for residue PO4 A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E52)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:722 -Pro A:723

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E52)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E52)

(-) Exons   (0, 0)

(no "Exon" information available for 5E52)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeee...eeeeee...........eeeeeee.......ee..ee...ee....eeeee......eeeeeeeee............ee..........eeeee......eeeeeee..hhhhh.....eeeeeeee......eeeee......eeeee........eeeeeeeeee..eeeee...eeee.............eeee.....eeee............eeeeeee.......eee......eeee.......eeeeeeeee...........eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5e52 A 671 PGPPGIVIVEEITESTATLSWSPAADNHSPISSYNLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNPWVEYEFRVVATNPTGDPSTPSRMIRTNEAVPKTAPTNVSGRSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDESVPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFEVGYWKEQEDTETVKTRGNESFVILTGLEGNTLYHFTVRAYNGAGYGPPSSEVSATT 969
                                   680       690       700       710       720       730       740       750  ||   762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912  ||   925       935       945       955       965    
                                                                                                            753|                                                                                                                                                            915| 922|                                             
                                                                                                             756                                                                                                                                                             918  924
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E52)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E52)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E52)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  5e52
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  CNTN5_HUMAN | O94779
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CNTN5_HUMAN | O94779: 4n68

(-) Related Entries Specified in the PDB File

5e4q 5e4s