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(-) Description

Title :  CRYSTAL STRUCTURE OF MEASLES N0-P COMPLEX
 
Authors :  S. G. Guryanov, L. Liljeroos, P. Kasaragod, T. Kajander, S. J. Butcher
Date :  07 Oct 15  (Deposition) - 27 Jan 16  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Paramyxovirus, Nucleocapsid Protein, Rna-Binding Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Guryanov, L. Liljeroos, P. Kasaragod, T. Kajander, S. J. Butcher
Crystal Structure Of The Measles Virus Nucleoprotein Core I Complex With An N-Terminal Region Of Phosphoprotein.
J. Virol. V. 90 2849 2015
PubMed-ID: 26719278  |  Reference-DOI: 10.1128/JVI.02865-15

(-) Compounds

Molecule 1 - NUCLEOPROTEIN,PHOSPHOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET22B
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector Type: PLASMID
    Fragment: NUCLEOPROTEIN CORE DOMAIN WITH PHOSPHOPROTEIN BINDING PEPTIDE FUSED,NUCLEOPROTEIN CORE DOMAIN WITH PHOSPHOPROTEIN BINDING PEPTIDE FUSED
    Gene: N, NP
    Organism Common: MEV
    Organism Scientific: MEASLES VIRUS (STRAIN EDMONSTON B), MEASLES VIRUS (STRAIN EDMONSTON-MORATEN VACCINE)
    Organism Taxid: 70146, 132484
    Other Details: FIRST RESIDUE REMAINED FROM TEV CLEAVAGE SITE. RESIDUES 2-389 CORRESPOND TO MEASLES NUCLEOPROTEIN GENBANK ID AAA18995.1 AA 21-408. RESIDUES 390-437 CORRESPOND TO MEASLES PHOSPHOPROTEIN GENBANK ID AAF85668.1 AA 1-48 (ALTHOUGH THE FULL SEQUENCE OF THE PROTEIN IN OUR VIRUS STRAIN (HALONEN STRAIN) DIFFERS BY D512N VARIATION COMPARED TO AAF85668.1, THE DIFFERENCE DOES NOT AFFECT THE PART OF THE SEQUENCE USED IN THE EXPERIMENT).
    Strain: EDMONSTON B, EDMONSTON-MORATEN VACCINE
    Synonym: NUCLEOCAPSID PROTEIN,PROTEIN N

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E4V)

(-) Sites  (0, 0)

(no "Site" information available for 5E4V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E4V)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ala A:98 -Ser A:99
2Gln A:183 -Arg A:184
3Gly A:226 -Asn A:227
4Ser A:327 -Met A:328

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E4V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E4V)

(-) Exons   (0, 0)

(no "Exon" information available for 5E4V)

(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....hhhhhhhhhh....eeeeeeeeee.......eee....hhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e4v A  12 IKHIIIVPIPGDSSITTRSRLLDRLVRLIGNPDVSGPKLTGALIGILSLFVESPGQLIQRITDDPDVSIRLLEVVQSDQSQSGLTFASTNMEDEADQYFSDQSRFGWFENKEISDIEVQDPEGFNMILGTILAQIWVLLAKAVTAPDTAADSELRRWIKYTQQRRVVGEFRLERKWLDVVRNRIAEDLSLRRFMVALILDIKRTPGNKPRIAEMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTLESLMNLYQQMGETAPYMVILENSIQNKFSAGSYPLLWSYAMGVGVELENSMGGLNFGRSYFDPAYFRLGQEMVRRSAGKVSSTLASELGITAEDARLVSEIAMHTTEDKISRMAEEQARHVKNGLECIRALKAEPIGSLAIEEAMAAWSE 427
                                    21        31        41        51        61        71        81        91       103       113|      130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       
                                                                                                                  99|        113|                                                                                                                                                                                                                                                                                                                  
                                                                                                                  102         121
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E4V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E4V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E4V)

(-) Gene Ontology  (13, 14)

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  Cis Peptide Bonds
    Ala A:98 - Ser A:99   [ RasMol ]  
    Gln A:183 - Arg A:184   [ RasMol ]  
    Gly A:226 - Asn A:227   [ RasMol ]  
    Ser A:327 - Met A:328   [ RasMol ]  
 
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  5e4v
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  Q77M42_MEASM | Q77M42
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 Related Entries

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UniProtKB/TrEMBL
        Q77M42_MEASM | Q77M42: 1t6o

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