5E4F - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Title :   THE SPRING ALPHA-HELIX COORDINATES MULTIPLE MODES OF HCV NS3 HELICASE ACTION

Authors :   M. Gu, C. M. Rice

Date :   05 Oct 15 (Deposition) - 18 May 16 (Release) - 27 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hcv Ns3 Helicase, Transition State, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Gu, C. M. Rice
The Spring Alpha-Helix Coordinates Multiple Modes Of Hcv (Hepatitis C Virus) Ns3 Helicase Action.
J. Biol. Chem. V. 291 14499 2016
PubMed-ID: 27226535 | Reference-DOI: 10.1074/JBC.M115.704379

Molecule 1 - SERINE PROTEASE NS3
	Chains	:	A, B
	EC Number	:	3.4.21.98, 3.6.1.15, 3.6.4.13
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 1215-1651
	Organism Common	:	HCV
	Organism Scientific	:	HEPATITIS C VIRUS GENOTYPE 1B (ISOLATE CON1)
	Organism Taxid	:	333284
	Strain	:	ISOLATE CON1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ALF	2	Ligand/Ion	TETRAFLUOROALUMINATE ION
3	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ALF	1	Ligand/Ion	TETRAFLUOROALUMINATE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ALF	1	Ligand/Ion	TETRAFLUOROALUMINATE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:206 , GLY A:207 , LYS A:210 , GLU A:291 , GLY A:417 , ARG A:464 , ARG A:467 , ADP A:702 , MG A:703 , HOH A:837 , HOH A:839 , HOH A:854 , HOH A:897	binding site for residue ALF A 701
2	AC2	SOFTWARE	GLY A:207 , SER A:208 , GLY A:209 , LYS A:210 , SER A:211 , THR A:212 , TYR A:241 , THR A:419 , ARG A:467 , GLY A:468 , ALF A:701 , MG A:703 , HOH A:837 , HOH A:843 , HOH A:858 , HOH A:887	binding site for residue ADP A 702
3	AC3	SOFTWARE	SER A:211 , ALF A:701 , ADP A:702 , HOH A:837 , HOH A:839 , HOH A:908	binding site for residue MG A 703
4	AC4	SOFTWARE	THR B:206 , GLY B:207 , LYS B:210 , GLU B:291 , GLY B:417 , ARG B:464 , ARG B:467 , ADP B:702 , MG B:703 , HOH B:835 , HOH B:845 , HOH B:859 , HOH B:868	binding site for residue ALF B 701
5	AC5	SOFTWARE	GLY B:207 , SER B:208 , GLY B:209 , LYS B:210 , SER B:211 , THR B:212 , GLY B:237 , TYR B:241 , THR B:419 , ARG B:467 , GLY B:468 , ALF B:701 , MG B:703 , HOH B:832 , HOH B:859	binding site for residue ADP B 702
6	AC6	SOFTWARE	SER B:211 , ALF B:701 , ADP B:702 , HOH B:823 , HOH B:845 , HOH B:859	binding site for residue MG B 703

(no "SS Bond" information available for 5E4F)

Asymmetric Unit

No.	Residues
1	Asp A:441	-	Pro A:442
2	Asp B:441	-	Pro B:442

(no "SAP(SNP)/Variant" information available for 5E4F)

(no "PROSITE Motif" information available for 5E4F)

(no "Exon" information available for 5E4F)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:437
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeee........hhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh....eee....ee.....eeeeehhhhhhh.........eeee......hhhhhhhhhhhhhhh......eeeeee.............eeeee......eee..eeehhhhh...eeeee..hhhhhhhhhhhhhhh...eeee....hhhhh.....eeeee.hhhhh.......eeee..eeeeeeee.......eeeeeeee.hhhhhhhhhh.......eeeee...........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...ee...........ee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e4f A 189 SPPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSSTGEIPFYGKAIPIETIKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDVSVIPTSGDVIVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA 625
                                   198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578       588       598       608       618

Chain B from PDB  Type:PROTEIN  Length:429
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee........hhhhhhhhh....eeeee.hhhhhhhhhhhhhhh.....eee....ee.....eeeeehhhhhhh.........eeeee.....hhhhhhhhhhhh.hhhhhh..eeeeee.............eeeee......eee..eeehhhhh...eeeee..hhhhhhhhhhhhhh....eeee....hhhhh.....eeeee.hhhhh.......eeee..eeeeeeee.......eeeeeeee.hhhhhhhhhh.......eeeee...........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...ee...........ee..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e4f B 197 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSSTGEIPFYGKAIPIETIKGGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGLDVSVIPTSGDVIVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRMGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTTTHPITKYIMACMSA 625
                                   206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5E4F)

(no "CATH Domain" information available for 5E4F)

(no "Pfam Domain" information available for 5E4F)

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	Cis Peptide Bonds
		Asp A:441 - Pro A:442	[ RasMol ]
		Asp B:441 - Pro B:442	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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(no "Related Entries Specified in the PDB File" available for 5E4F)

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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