5E32 - JenaLib

Title :   CRYSTAL STRUCTURE OF H5 HEMAGGLUTININ MUTANT (N224K, Q226L, N158D AND L133A DELETION) FROM THE INFLUENZA VIRUS A/CHICKEN/VIETNAM/NCVD-093/2008 (H5N1)

Authors :   X. Zhu, I. A. Wilson

Date :   01 Oct 15 (Deposition) - 02 Dec 15 (Release) - 09 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (3x)

Keywords :   H5N1 Influenza Virus, Hemagglutinin, Receptor Binding Specificity, Transmission, Glycan Complex, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Zhu, K. Viswanathan, R. Raman, W. Yu, R. Sasisekharan, I. A. Wilson
Structural Basis For A Switch In Receptor Binding Specificity Of Two H5N1 Hemagglutinin Mutants.
Cell Rep V. 13 1683 2015
PubMed-ID: 26586437 | Reference-DOI: 10.1016/J.CELREP.2015.10.027

Compounds

Molecule 1 - HEMAGGLUTININ
	Chains	:	A
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Plasmid	:	PFASTBAC-HT
	Expression System Strain	:	HI5
	Expression System Taxid	:	7111
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 17-346
	Gene	:	HA
	Mutation	:	YES
	Organism Scientific	:	INFLUENZA A VIRUS (A/CHICKEN/VIETNAM/NCVD- 093/2008(H5N1))
	Organism Taxid	:	581024
	Strain	:	A/CHICKEN/VIETNAM/NCVD-093/2008(H5N1)
	Synonym	:	HEMAGGLUTININ HA1 CHAIN

Molecule 2 - HEMAGGLUTININ
	Chains	:	B
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Plasmid	:	BACULOVIRUS
	Expression System Strain	:	HI5
	Expression System Taxid	:	7111
	Fragment	:	UNP RESIDUES 347-521
	Gene	:	HA
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	581024
	Strain	:	A/CHICKEN/VIETNAM/NCVD-093/2008(H5N1)
	Synonym	:	HEMAGGLUTININ HA2 CHAIN

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 3)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 9)

No.	Name	Count	Type	Full Name
1	NAG	9	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:33	binding site for Mono-Saccharide NAG A 1001 bound to ASN A 33
2	AC2	SOFTWARE	ASN A:167 , THR A:242	binding site for Mono-Saccharide NAG A 1002 bound to ASN A 167
3	AC3	SOFTWARE	ASN A:278 , ASN A:289	binding site for Mono-Saccharide NAG A 1003 bound to ASN A 289

SS Bonds (6, 6)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh..ee....hhhhh..........eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.eee..ee......ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5e32 A    8 DPGDQICVGYHANNSTEQVDTIMEKNITVTHAQDILEKTHNGKLCNLNGVKPLILKDCSVAGWLLGNPMCDEFLNVSEWSYIVEKASPANGLCYPGDFNDYEELKHLLSRINHFEKIKIIPKSYWSNHETSGVSSACSYLENPSFFRNVVWLTKKDNTYPPIKVNYTNANQKDLLVLWGIHHPNNEAEQKMIYQNLNTYVSVGTSTLNQRLVPKIATRSKVKGLSGRMDFFWTILKPNDTINFDSNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNAP  324
                                    17        27        37        47        56        66        76       |85        95 |     104       114       124 ||    132       142       152       162       172       182       192       202       212       222       232       242       252       261       271       281       291       301       311       321   
                                                                          55A                          83A           96A                          125A|                                                                                                                                    260A                                                                
                                                                                                                                                   125B

Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee....eeeee.hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee.......hhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5e32 B    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGITNKINSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYEKVRLQLRDNAKELGNGCFEFYHKCDNECMESVKNGTYDYPQYSEEARLNREEISG  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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