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(-)Asym./Biol. Unit
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(-) Description

Title :  PDZ2 OF LNX2 AT 277K,SINGLE CONFORMER MODEL
 
Authors :  D. R. Hekstra, K. I. White, M. A. Socolich, R. Ranganathan
Date :  30 Sep 15  (Deposition) - 07 Dec 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.01
Chains :  Asym./Biol. Unit :  A
Keywords :  Room Temperature, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Hekstra, K. I. White, M. A. Socolich, R. W. Henning, V. Srajer, R. Ranganathan
Electric-Field-Stimulated Protein Mechanics.
Nature V. 540 400 2016
PubMed-ID: 27926732  |  Reference-DOI: 10.1038/NATURE20571

(-) Compounds

Molecule 1 - LIGAND OF NUMB PROTEIN X 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: SECOND PDZ DOMAIN (UNP RESIDUES 336-424)
    Gene: LNX2, PDZRN1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NUMB-BINDING PROTEIN 2,PDZ DOMAIN-CONTAINING RING FINGER PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E21)

(-) Sites  (0, 0)

(no "Site" information available for 5E21)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E21)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E21)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E21)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E21)

(-) Exons   (0, 0)

(no "Exon" information available for 5E21)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.........eeee.......eeeeee...hhhhhhh......eeeee..ee....hhhhhhhhhhh...eeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 5e21 A 334 SMEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPEIEL 428
                                   343       353       363       373       383       393       403       413       423
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E21)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E21)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E21)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5e21)
 

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 Databases and Analysis Tools

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  5e21
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
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    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
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  LNX2_HUMAN | Q8N448
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
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(-) Analysis Tools

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    Interatomic Contacts of Structural Units: CSU
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  LNX2_HUMAN | Q8N448
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LNX2_HUMAN | Q8N448: 2vwr 5din 5e11 5e1y 5e22

(-) Related Entries Specified in the PDB File

5e11 5E11 IS A DATA SET FOR THE SAME PROTEIN OBTAINED BY LAUE CRYSTALLOGRAPHY
5e1y MODEL WITH ALTERNATE CONFORMATIONS FOR THE SAME DATA SET.
5e22