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(-) Description

Title :  CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE AGEI
 
Authors :  G. Tamulaitiene, I. Ramonaite, S. Grazulis, V. Siksnys
Date :  22 Sep 15  (Deposition) - 28 Sep 16  (Release) - 03 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Restriction Endonuclease, Pd-(D/E)Xk Nuclease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Tamulaitiene, V. Jovaisaite, G. Tamulaitis, I. Songailiene, E. Manakova, M. Zaremba, S. Grazulis, S. Y. Xu, V. Siksnys
Restriction Endonuclease Agei Is A Monomer Which Dimerizes To Cleave Dna.
Nucleic Acids Res. V. 45 3547 2017
PubMed-ID: 28039325  |  Reference-DOI: 10.1093/NAR/GKW1310

(-) Compounds

Molecule 1 - TYPE-2 RESTRICTION ENZYME AGEI
    Chains: A
    EC Number: 3.1.21.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRRS-AGEIRM
    Expression System Strain: ER2566
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AGEIR
    Organism Scientific: THALASSOBIUS GELATINOVORUS
    Organism Taxid: 53501
    Synonym: R.AGEI,ENDONUCLEASE AGEI,TYPE II RESTRICTION ENZYME AGEI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CSO1Mod. Amino AcidS-HYDROXYCYSTEINE

(-) Sites  (0, 0)

(no "Site" information available for 5DWC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DWC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:204 -Pro A:205

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DWC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DWC)

(-) Exons   (0, 0)

(no "Exon" information available for 5DWC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....eeee....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhh.hhhhhh.....eeeeee..........eeeeeeeeee.....hhhhhhhhhhhhhhh..eeeeee.........................hhhhhhhhh.....eeee.................eee.......hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dwc A   1 MRLDLDFLVAHVMLDNVSEEQYQQISDYFVPLVNKPKLKSRDAIGQAFVMATEVCPDANPSDLWHHVLYRIYIREKIGTDPSQSWVRTSGEAFEVALVERYNPVLARHGIRLTALFKGQKGLALTRMGVADRVGSRKVDVMIEKQGGGRSPDAEGFGVVGGIHAKVSLAERVSDDIPASRIMMGEGLLSVLSTLDVKSFPPPHGDLVNRGELGTPDRPSDKRNYIEGHGDFSAcFSYNLRTSPSNATTPSGRHIYVSGFSGQDDEFTDYLVAQL 277
                                  ||13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233   |   243       253       263       273    
                                  7|                                                                                                                                                                                                                               237-CSO                                    
                                  11
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DWC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DWC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DWC)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Pro A:204 - Pro A:205   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        T2A1_THAGE | Q9KHV6: 5dwa 5dwb

(-) Related Entries Specified in the PDB File

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