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(-) Description

Title :  MOUSE POLO-BOX DOMAIN AND PEPTIDE ANALOG 702
 
Authors :  S. Namgoong, Y. H. Han
Date :  10 Sep 15  (Deposition) - 24 Feb 16  (Release) - 24 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Plk1, Emi2, Protein Kinase, Meiosis, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Jia, Y. H. Han, H. C. Kim, M. Ahn, J. W. Kwon, Y. Luo, P. Gunasekaran, S. J. Lee, K. S. Lee, J. K. Bang, N. H. Kim, S. Namgoong
Structural Basis For Recognition Of Emi2 By Polo-Like Kinas 1 And Development Of Peptidomimetics Blocking Oocyte Maturation And Fertilization.
Sci Rep V. 5 14626 2015
PubMed-ID: 26459104  |  Reference-DOI: 10.1038/SREP14626

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PLK1
    Chains: A
    EC Number: 2.7.11.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 367-603
    Gene: PLK1, PLK
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: POLO-LIKE KINASE 1,PLK-1,SERINE/THREONINE-PROTEIN KINASE 13, STPK13
 
Molecule 2 - PEPTIDE 707-56A-SER-TPO-NH2
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric/Biological Unit (4, 4)
No.NameCountTypeFull Name
156A1Mod. Amino Acid3-(8-PHENYLOCTYL)-L-HISTIDINE
27071Mod. Amino AcidN-(3-BROMO-4-METHOXYBENZOYL)-BETA-ALANINE
3NH21Mod. Amino AcidAMINO GROUP
4TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (0, 0)

(no "Site" information available for 5DNJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DNJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DNJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DNJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DNJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5DNJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.........hhhhhhhhhh....eeeeee.....eeeeee....eeeee....eeee.....eeeee.....eeeee....hhhhhhhhhhhhhhhhhhhhhh..............eeeeee...eeeeee....eeeee.....eeeee....eeeee.....eeeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dnj A 373 HLSDLLQQLTSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLNYFRNYMSEHLLKAGANITPRELPYLRTWFRTRSAIILHLSNGTVQINFFQDHTKLILCPLMAAVTYINEKRDFQTYRLSLLEEYGCCKELASRLRYARTMVDKLLSS 593
                                   382       392       402       412       422       432       442       452       462       472       482       492       508       518       528       538       548       558       568       578       588     
                                                                                                                                                          501|                                                                                     
                                                                                                                                                           508                                                                                     


Chain B from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 5dnj B   1 xxStx   5
                            || ||
                            1-707
                             2-56A
                               4-TPO
                                5-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DNJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DNJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DNJ)

(-) Gene Ontology  (61, 61)

Asymmetric/Biological Unit(hide GO term definitions)

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  PLK1_MOUSE | Q07832
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLK1_MOUSE | Q07832: 5dms 5dmv

(-) Related Entries Specified in the PDB File

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